Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01206 ATGTTCAAGAAAATCATGAAAGGCGGGCACAAGAAGCCCTCCAAGTCCGACGCAAGCGATCCCGTGTCTGCGGCGTTTGTCGCCGCCAACCGCAACTTGCCAGCGTTGCCCTCGCCCAATGTCGTCGTGAACCATGCCTCGCGCGGAACTGGAGGTGCGGCGCCTCCTAGCTCCGGCACCGCGATGCCGCTTGTGCCTACCCCTGGGGCCATGGAGCCTTTGCCGCCATTCCGCGATACGCCGGTCGCTGACCGGCAGAACCTCTTCCTCCGGAAGCTCCATATCTGCTGCTACGTCCTGGACTTCTCCGACACGCTGAAGAACGTTAGAGAGAAGGAAATCAAGCGCCAAGCGCTGATGGACCTCGTCGACTTCATCCAATCCGGCTCCGGCAAGATGTCGGAGCATTGCCAGGAGGAGATGATCAGAATGATCTCAGTCAACATTTTCCGGTGCCTTCCTCCGGCGTCTCACGAGAACACCGGCCAGGAACCAACCGATCCTGAAGAGGAGGAACCAAGCATGGATCCGACCTGGCCTCACCTTCAGCTCGTCTACGAGCTTCTCCTCAGATACGTGGTTTCCTCTGATACCGATACGAAAATCGCAAAACGGTATATTGACCACTCCTTTGTTCTCAAATTGCTTGATTTGTTTGACACTGAGGACCCGCGGGAGAGGGAGTATTTGAAAACCATACTGCATCGTATATACGGGAAATTCATGGTGCATAGACCGTTTATTAGAAAGGCTATTAACAACATTTTTTATCGGTTCATATATGAGACTGAGCGGCACTCTGGTATTGGAGAGCTTCTGGAGATTCTTGGGAGCATTATTAATGGGTTTGCGCTGCCCATGAAAGAGGAGCACAAGTTGTTTCTCGTGAGGGCTCTTTTGCCTCTGCATAAACCGAAATCTGTGTCCATGTACCACCAGCAGTTGTCTTACTGCATTACTCAGTTTGTGGAGAAGGATTTCAAGCTAGCAGATACGGTGATTAGGGGGTTGTTGAAGTATTGGCCTCTTACCAATTGCCAGAAGGAGGTTCTCTTCCTTGGAGAACTGGAGGAAGTGCTGGAGGTCACGCAGGCTGCGGAGTTTCAAAAATGTATGGTTCCGCTTTTTAGACAGATTTCACGCTGCCTCAATAGCTCTCACTTTCAGGTTGCAGAACGAGCCCTGTTTTTGTGGAACAATGAGCATATCGTGAGCTTAATTGCCCAAAACAGGACGGTGGTACTACCAATAATATTTGAAGCATTTGAGAAAAACATCTCGAATCATTGGAATCAAGCAGTACATGGACTGACGGTGAATGTTCGCAAAATGTTCCTGGAAATGGATGCAGAATTGTTTGAAGAGTGCCAGCGGCAGCACGCAGAGAAAGAGGCTAAAGCCAAAGATGTAGAAGAGCAGCGGGAACTTAATTGGAAGAGACTGGAAGATGCGGCTGCACAGAATGGATTTGAGGATATGGTCTTAACTTAG 1491 0.501 MFKKIMKGGHKKPSKSDASDPVSAAFVAANRNLPALPSPNVVVNHASRGTGGAAPPSSGTAMPLVPTPGAMEPLPPFRDTPVADRQNLFLRKLHICCYVLDFSDTLKNVREKEIKRQALMDLVDFIQSGSGKMSEHCQEEMIRMISVNIFRCLPPASHENTGQEPTDPEEEEPSMDPTWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDTEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKSVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEVTQAAEFQKCMVPLFRQISRCLNSSHFQVAERALFLWNNEHIVSLIAQNRTVVLPIIFEAFEKNISNHWNQAVHGLTVNVRKMFLEMDAELFEECQRQHAEKEAKAKDVEEQRELNWKRLEDAAAQNGFEDMVLT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01206 496 Coils Coil 453 473 - -
Vimu3g01206 496 SUPERFAMILY ARM repeat 86 467 IPR016024 -
Vimu3g01206 496 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 490 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu3g01206 496 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g01206 496 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 74 485 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu3g01206 496 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 81 484 - -
Vimu3g01206 496 Gene3D - 81 484 IPR011989 -
Vimu3g01206 496 PIRSF PP2A_B56 10 494 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01206 Vimu-Chr3 20520348 20526914 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01206 K11584 - gmx:100795277 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01206 3 20520348 20526914 Vimu3g01206 3 20520348 20526914 ECH
Vimu6g02470 6 21492977 21494176 Vimu3g01206 3 20520348 20526914 PCT