Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02461 ATGAGTTCATCCTCCGGTCAGAGCAGTGGCTTTGATCTCTCTTTCAAGATCTTGTTGATCGGAGATTCTGGGGTGGGAAAAAGTAGCCTACTTGTCAGCTTCATTTCAAGTTCTGTTGAAGATCTTACCCCCACCATTGGTGTCACACTTCTGATACATTGTTTGCAACCAAATGGTGTTGATTTTAAGATCAAAACGCTCACAGTAGGTGGAAAGAGACTGAAATTAACGATTTGGGATACTGTTTATGATGTGACAAGGAGAGAAACCTTTACAAACCTATCAGAAGTGTGGTCTAAGGAAGTGGAACTCTACTCAACTAATCAGGATTGCGTGAAGATGCTAGTTGGAAACAAAGTTGATAGAGATACTGAAAGGACTGTGAGCAGAGAAGAGGGTTTAGCCCTTGCCAAAGAATTGGGGTGTTTGCTTGTTGAATGTAGTGCAAAAACTAGGGAAAATGTGGAGCAGTGCTTTGAGGAACTTGCTCTAAAGATAATGGAAGCTCCCAGTCTTTTGGAAGAAGGATCAACAGCAGTTAAAAGGAGTGTTTTAAAACAGAAGCAAGAGCCCCAAGCCTCCCAAAATAGTGGTTGTTGCTCTTAA 606 0.4175 MSSSSGQSSGFDLSFKILLIGDSGVGKSSLLVSFISSSVEDLTPTIGVTLLIHCLQPNGVDFKIKTLTVGGKRLKLTIWDTVYDVTRRETFTNLSEVWSKEVELYSTNQDCVKMLVGNKVDRDTERTVSREEGLALAKELGCLLVECSAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRSVLKQKQEPQASQNSGCCS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02461 201 Gene3D - 82 199 IPR027417 -
Vimu6g02461 201 PANTHER RAS-RELATED PROTEIN RAB 14 82 - -
Vimu6g02461 201 NCBIfam small GTP-binding protein domain 15 161 IPR005225 GO:0005525
Vimu6g02461 201 Pfam Ras family 82 167 IPR001806 GO:0003924|GO:0005525
Vimu6g02461 201 Pfam Ras family 16 81 IPR001806 GO:0003924|GO:0005525
Vimu6g02461 201 ProSiteProfiles small GTPase Rab1 family profile. 10 201 - -
Vimu6g02461 201 SMART ras_sub_4 12 169 - -
Vimu6g02461 201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 188 IPR027417 -
Vimu6g02461 201 ProSiteProfiles small GTPase Ras family profile. 1 201 IPR001806 GO:0003924|GO:0005525
Vimu6g02461 201 SMART rab_sub_5 15 169 - -
Vimu6g02461 201 Gene3D - 1 81 IPR027417 -
Vimu6g02461 201 SMART rho_sub_3 17 170 IPR001806 GO:0003924|GO:0005525
Vimu6g02461 201 PRINTS Transforming protein P21 ras signature 144 166 - -
Vimu6g02461 201 PRINTS Transforming protein P21 ras signature 109 122 - -
Vimu6g02461 201 PRINTS Transforming protein P21 ras signature 37 53 - -
Vimu6g02461 201 PRINTS Transforming protein P21 ras signature 15 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02461 Vimu-Chr6 21424895 21427535 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02461 K07910 - gmx:100799887 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02461 6 21424895 21427535 Vimu6g02461 6 21424895 21427535 ECH
Vimu6g02461 6 21424895 21427535 Vimu3g01194 3 20314935 20320814 PCT