Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01194 ATGAGTTCTTCTTCTGGTCAGAGCAGTGGCTATGATCTCTCCTTCAAGATCTTGTTGATCGGTGACTCTGCCGTGGGAAAAAGTAGCCTCCTTGTTAGCTTCATCTCCAACTCTGTTGAAGATATTGCCCCCACAATCGGTGTTGATTTTAAGATCAAGGTGTTCGAAGTAGGTGGGAAGAGATTGAAACTGACTATTTGGGACACAGGTAATCATTGCTTCATAACCCAACAATTGGCGCCCACCGTGGGGCAAGGATTCAAGAATTCCCAAGGAGCAATGGCAACCAAGTTCGACGTAGAAAAGTTCAACGGCGCTAATGACTTCGGGCTGTGGAAGATCAAGATGGAGGCAATCTTGATACAGCAGGGATGTGTTGAAGCGTTGAAGGGTGAGTCGAAGATGAGTGATACCATGACTCAAGAAGAGAAGAAGAAGATGGGAGATAAGGCAAGGAGTGCAATCATCTTGTGCCTTGGTGATAAGGTACTGAGAGAGGTTGCGAAGGAGAAGACTGCCGCTGAAATCTGGGCAAAACTAGAGTCTCTGTACATGACGAGATCGTTGGCTCATAGGTTGTGCCTGAAGCAGCAACTCTTTTCGTTCAAGATGTCAGAATCAAGAACGATAGAGGAGCAGATTGCAGAATTCAGCAAGATTGTTGATGATCTGGAGAATATTGGAGTGAAGTTGGAGGATGAAGATAAAGCTGTCATCCTGTTGAATGCGCTTCCAAAAACCTTCGAGCATTTCAGGGATGCGTTACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGTTCTGACGTCAATTCGAACCAAGGAGTTCCAAAAACTCCAAGATTCGAAGACAACCGAGGAAGGAGCGTCCGGATTGATTGCGGTAAAAGGGAAAGGGAAGAAGCAGTCTGGAAAAGAGAAGAAGCTGAATCCGGACGGTACGAAGCAGGTGCGTTGCTTCAAGTGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCCGGAGAAAGGAAAGGCCGGTCGGCCACAAGAAACCGCTGACGTGGCAGAGGCGTCTGAGGGATATGAGTCGGCTGGAGTGCTGGTGGCTTCGTCTGAAGATCCTCAAAGGAGCTGGGTCATGGATTCCGGCTGCTCCTATCACATGTGCCCGGTAAAGGAGTTTTTTGAGAATCTGGATCAGAAAGAGCATGGTAATGTACTGCTCGGTAATAACAAAGCTTGCCGAGTGCAAGGTGTGGGGTCGGTGAGGCTGAAGATGTTTGACAATCGTGAGATGGTGTTGCAGGCCGTCCGGTATGTGCCCGAACTAAAGAGAAATTTGATTTCTATTAGTGCATTTGATCTTGGAGGTTACACCACTAAAGTTGAAGATGGAGTAATGAGGGTTTGTTCTGGAGACTCTGTGGTTGCCAAAGGCAGAAGGAGGAACGGCTTGTACATTCTGGAGGGATCAACTGTCATTGGTCATGTCTCAGTAGCAAGTGGGACCGAGAATACCGCCCGGTTATGGCACTTGAGGATGGGACACATCAGTGAGAAGGGTCTTGAAGAATTGGAAAAGCAAGACTTGCTTCTGGGAGACAAACTGCAGAAGCTGGATTTCTGTGACCATTGTGTCTTAGGGAAATCACACAGGATACCGTTCGGAAAAGGGAAACACTCAACCGAACGGCCCTTTGAATATGTCCATGCTGACTTATGGGGACCGGCAAGAACCTTAACTCATGGTGGAGGAGCGTATTTCTTAAGTATAATTGATGATTTCTCAAGGAGAGTGTGGATTTACGTTCTAAAGAATAAGTCTGAAACGTTTCAGAAATTCAAAGAGTGGCACACACAGATTGAAAACCAATTGGGGTGTAGGCTGAAATGCCTAAGGACCGATAATGGACTGGAGTTCGTTTCAGAGGAGTTTAATGGTTTTTGCAAAGAGAAAGGGATCAGGAGGCACAGAACGGTCGTTGGAACTCCTCAACAGAATGGATTGGCCGAACGGATGAACAGAACCATTCTGGAGAGGGTCCGGTGCATGTTGTTGGGATCAGGGTTGTCAAAAGCTTTCTGGGGAGAGGCTGCCAATACGGCCGTCTATTTGATCAACAGGAGTCCGTCTTCAGCTCTCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGACCGGCTGATTATTCACACTTGAGAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGGGGTGATAAGCTGGATTCCCGGGCGGCGAGATGTATCTTTCTTGGATACGCCGACGGAGTTAAGGGATACAGGTTATGGAGGTTAGATTCACCTTCAAAACTAATCATTAGTAGGGATGTCATTTTTGATGAAACAAGGATGGCGATGCACCCGGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGCACGGCCGGTGGGACTGAGGAAAACCAAACGGGTGAAGGGCAAGTTGAAACCGGTCGGACGATAGCTGAGAACCGACCGGATGAATTTCGAACAGACCTTGGTGATGACACAGATGATATGTCTGGCGAGGGAAGTCATGGAAAAGCTGCTGGTGTTGATTTGAGAAACTATCAGCTTGTTCGTGACAGAGAAAGAAGGATCTCCAAGCCAACCAAACGGCTTGGAGAGGCGGATCTAATCTGCTACGCCCTGAACGCTGCTGAAGATATTAACCGATCGGATGAACCGAGAAGTTATAAGGAGGCTCTTGACAGCAGCGACCGGCATCTTTGGCAGGGTGCTATGGAAGAAGAGTTGGAGGCTTTGGAAAAGAATAACACCTGGAGACTGGTGGATCTGCCGAAGGGTAAGAAGGTCATAGGTTCGAAATGGATTTTCAAGAAAAAAGAAGCTACACCGGGCGGTGAGAAAGCGAGGTACAAAGCTAGGCTTGTTGCCAAAGGCTTTACTCAGATTGAAGGCGTAGACTATCATGAGATCTTTGCTCCAGTGGTTAAGCATTGTTCGGTCAGAGTTCTGATGGCAATAGTTGCGCATTGCAATTTGCATCTTGAACAGTTGGACGTTCGGACAGCTTTTCTGCACGGCGATTTGGAGGAAACCATCTATATGAAGCAACCGGACGGTTTCGCTGTGGATGATAGGGTGTGTCTGTTGCAGAAGTCACTTTATGGCTTGAAGCAAAGCCCAAGGCAGTGGTACAGGAAATTTGATGACTTTCTGATAAAGCTGAACTTCAAGCGGTGCAATTATGATGACTGTGTTTACACTCTGAATCATGGCGGTGAAATGTTATATCTCCTGCTTTATGTGGATGATATCCTAATTGCTAGCAGTGACAGGGGCATGATCGGTGAGACGAAAGCAAGGTTGGCGGATGCTTTCGAAATGAAAGAGCTAGGGGAAGCAAGGCGGATTTTGGGCATAGACATTAAAAGGGATAGACCGGGCGGTAACCTTTTTCTGTCTCAGGAATGCTATTTGCATAAGGTAATTTCAAGGTATCGGATGGCTGAATCTAAAATGGCCAGCACGCCGGTCGGTCAACACTTGAAACTTACCAAGGAGCAATGCCCAAAGACCGAGGAAGAAAGAAAGAAGATGGAATCTGTTCCATTTTCAAATGGGATTGGGAGCATTATGTACGGCATGGTCTGCACAAGACCGGACGTGGCGCACGGTGTTAGTGTTCTCAGTCAGTTCATGGTTAATCCTGGACCAACACACTGGGAAGCGTTGAAGTGGATGCTCAGATATATACGGGGGTCTCTCGGTACTGGATTGTTTTTCCAGAATAACTTTCAAGGTGGAGGTTATATTGAAGGTTTTGTTGATTCCGACTTTGCCGGATGCATGGACACTAGGAAATCCCGGTCGGGATATGTGTTTACACTGTTTGGGACTGCTGTTAGCTGGAGGTCTACACTACAGTCGGTTGTGGCTTTGTCAACTACGGAAGCTGAGTACTATGCTCTTGCTGAAGGAGTTAAGGAGGCACTGTGGTTGAAAGGTTTGGTTCGGGAACTTGGTTTTGATCAGAAGTCTGTATGTGTTCATTGCGACAGCCAGAGTGCTATTCATCTGGCCAATCATCAGATTTATCATTCCAGAACCAAGCATATTGACGTCAAGCTGCACTTTGTCAGAAGCATTGTTGAATCCGGTGACGTTCAAATCTGCAAAATTGCATCCGAAGAGAATCCTGCAGATATGTTAACAAAGCCGCTCGCTAAGGAGAGGTTTCTCTTACTGTTGTCCAGGATTGGGTGTCTACCGGTCGGTCACTAA 4281 0.4698 MSSSSGQSSGYDLSFKILLIGDSAVGKSSLLVSFISNSVEDIAPTIGVDFKIKVFEVGGKRLKLTIWDTGNHCFITQQLAPTVGQGFKNSQGAMATKFDVEKFNGANDFGLWKIKMEAILIQQGCVEALKGESKMSDTMTQEEKKKMGDKARSAIILCLGDKVLREVAKEKTAAEIWAKLESLYMTRSLAHRLCLKQQLFSFKMSESRTIEEQIAEFSKIVDDLENIGVKLEDEDKAVILLNALPKTFEHFRDALLYGKDQVITLEEVLTSIRTKEFQKLQDSKTTEEGASGLIAVKGKGKKQSGKEKKLNPDGTKQVRCFKCQKMGHIKKFCPEKGKAGRPQETADVAEASEGYESAGVLVASSEDPQRSWVMDSGCSYHMCPVKEFFENLDQKEHGNVLLGNNKACRVQGVGSVRLKMFDNREMVLQAVRYVPELKRNLISISAFDLGGYTTKVEDGVMRVCSGDSVVAKGRRRNGLYILEGSTVIGHVSVASGTENTARLWHLRMGHISEKGLEELEKQDLLLGDKLQKLDFCDHCVLGKSHRIPFGKGKHSTERPFEYVHADLWGPARTLTHGGGAYFLSIIDDFSRRVWIYVLKNKSETFQKFKEWHTQIENQLGCRLKCLRTDNGLEFVSEEFNGFCKEKGIRRHRTVVGTPQQNGLAERMNRTILERVRCMLLGSGLSKAFWGEAANTAVYLINRSPSSALNFKTPMEVWSGRPADYSHLRVFGSLAFAHVRGDKLDSRAARCIFLGYADGVKGYRLWRLDSPSKLIISRDVIFDETRMAMHPENSGSEKKILVEVEHTTNGAGTAGGTEENQTGEGQVETGRTIAENRPDEFRTDLGDDTDDMSGEGSHGKAAGVDLRNYQLVRDRERRISKPTKRLGEADLICYALNAAEDINRSDEPRSYKEALDSSDRHLWQGAMEEELEALEKNNTWRLVDLPKGKKVIGSKWIFKKKEATPGGEKARYKARLVAKGFTQIEGVDYHEIFAPVVKHCSVRVLMAIVAHCNLHLEQLDVRTAFLHGDLEETIYMKQPDGFAVDDRVCLLQKSLYGLKQSPRQWYRKFDDFLIKLNFKRCNYDDCVYTLNHGGEMLYLLLYVDDILIASSDRGMIGETKARLADAFEMKELGEARRILGIDIKRDRPGGNLFLSQECYLHKVISRYRMAESKMASTPVGQHLKLTKEQCPKTEEERKKMESVPFSNGIGSIMYGMVCTRPDVAHGVSVLSQFMVNPGPTHWEALKWMLRYIRGSLGTGLFFQNNFQGGGYIEGFVDSDFAGCMDTRKSRSGYVFTLFGTAVSWRSTLQSVVALSTTEAEYYALAEGVKEALWLKGLVRELGFDQKSVCVHCDSQSAIHLANHQIYHSRTKHIDVKLHFVRSIVESGDVQICKIASEENPADMLTKPLAKERFLLLLSRIGCLPVGH 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01194 1426 PRINTS Transforming protein P21 ras signature 37 53 - -
Vimu3g01194 1426 PRINTS Transforming protein P21 ras signature 55 77 - -
Vimu3g01194 1426 PRINTS Transforming protein P21 ras signature 15 36 - -
Vimu3g01194 1426 Gene3D - 2 101 IPR027417 -
Vimu3g01194 1426 MobiDBLite consensus disorder prediction 809 828 - -
Vimu3g01194 1426 MobiDBLite consensus disorder prediction 291 313 - -
Vimu3g01194 1426 SUPERFAMILY DNA/RNA polymerases 935 1378 IPR043502 -
Vimu3g01194 1426 Pfam Ras family 16 69 IPR001806 GO:0003924|GO:0005525
Vimu3g01194 1426 MobiDBLite consensus disorder prediction 808 860 - -
Vimu3g01194 1426 Pfam gag-polypeptide of LTR copia-type 146 275 - -
Vimu3g01194 1426 ProSiteProfiles Zinc finger CCHC-type profile. 319 335 IPR001878 GO:0003676|GO:0008270
Vimu3g01194 1426 PANTHER GAG-POL-RELATED RETROTRANSPOSON 454 1422 - -
Vimu3g01194 1426 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 936 1178 IPR013103 -
Vimu3g01194 1426 SUPERFAMILY Ribonuclease H-like 557 730 IPR012337 -
Vimu3g01194 1426 ProSiteProfiles small GTPase Rab1 family profile. 10 230 - -
Vimu3g01194 1426 Gene3D - 552 730 IPR036397 GO:0003676
Vimu3g01194 1426 SUPERFAMILY Retrovirus zinc finger-like domains 310 340 IPR036875 GO:0003676|GO:0008270
Vimu3g01194 1426 SMART rab_sub_5 15 146 - -
Vimu3g01194 1426 MobiDBLite consensus disorder prediction 832 854 - -
Vimu3g01194 1426 ProSiteProfiles Integrase catalytic domain profile. 555 721 IPR001584 GO:0015074
Vimu3g01194 1426 Pfam GAG-pre-integrase domain 478 544 IPR025724 -
Vimu3g01194 1426 Gene3D - 295 348 - -
Vimu3g01194 1426 SMART c2hcfinal6 319 335 IPR001878 GO:0003676|GO:0008270
Vimu3g01194 1426 CDD RNase_HI_RT_Ty1 1272 1410 - -
Vimu3g01194 1426 Pfam Integrase core domain 557 658 IPR001584 GO:0015074
Vimu3g01194 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 73 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01194 Vimu-Chr3 20314935 20320814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01194 901 1380 Receptor kinase-like Gene Family AT4G23160 37.910 2.97e-95 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01194 - - bna:106351154 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01194 3 20314935 20320814 Vimu3g01194 3 20314935 20320814 ECH
Vimu6g02461 6 21424895 21427535 Vimu3g01194 3 20314935 20320814 PCT