Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02460 ATGGATTTCCTTGTAAATGTCCTTCAATTGGTTAGGTATACCGTGGGCAAGATAACACCTATACCTACGCGAGAAGTAAGAATATCAGATTTTGGTACCAAAGCAAGCTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTAACACCTACCCATCCATCAGAGGATTTTAAATGGAAAGATTACTGCCCCATGGTGTTCAGAAATTTGAGAGAATTATTTAAGATTGACGCTGCCGACTACATGATGTCCATTTGTGGAAACGATACTCTGAGGGAACTATCTTCTCCAGGGAAAAGTGGCAGTGTCTTTTTCCTGTCTCAGGATGATCGTTTCATGATCAAGACGTTGCGAATGTCTGAAGTGAAGGTTCTTCTAAGAATGCTGCCAGACTATCATCATCATGTGAAGACATACGAAAATACACTTATCACAAAATTCTTTGGCTTGCACAGGATTAAGGCTTCAAGTGGTCAAAAGTTTCGCTTCGTTGTAATGGGAAATATGTTCTGCACGGAACTGAGGATCCATCGGAGATTTGATTTAAAAGGTTCTTCCTTTGGACGATCATCAGACAAGATAGAAATTGACGAAAATACAACACTAAAAGATTTGGATCTGAACTACTGTTTCTACTTGGAACCGTCTTGGCGGGAGTCTTTATTAAAGCAGATTGAAATAGACAGCAAATTTTTAGAAGCACAACACATTATGGATTACAGCCTTCTTCTAGGTGTTCACTATCGAGCTCCACAGCATCTGCGTCCTCTCATATCATACAACCAAAGTAGAAGTGTGGATGGATTAGCAATGCTTGCAGAAGAAGATCCTCTGGAGGATGAAGCATCCTATCCACAAGGTCTTGTTCTAGTTCCTAGAGGAGCAGATGATAACAGTGTTGTTGTGGGCTCACATGTGAGGGGTAGTCGGTTGCGGGCTTCATCTGCTGGTGATGAGGAGGTGGATCTACTCTTACCTGGTACAGCAAGACTCCAAATCCAGCTTGGTGTGAACATGCCTTCAAGGGCAGAGCAGATTTCAGAAAAAGAAGAAAAACCAAAGTTCCAGGAGGTCTACGATGTGGTGCTGTACCTGGGTATCATTGATATATTGCAGGACTATAACATGACCAAGAAGATTGAACATGCTTATAAATCTCTTCAGTTTGATTCATTGTCTATCTCAGCTGTGGACCCTACATTCTACTCTCGTCGTTTCCTGGAGTTTATTCAAAAAGTGTTTCCACCAAATGCAATGGCAGGTGGATAA 1269 0.4129 MDFLVNVLQLVRYTVGKITPIPTREVRISDFGTKASFWMNFPKEGSQLTPTHPSEDFKWKDYCPMVFRNLRELFKIDAADYMMSICGNDTLRELSSPGKSGSVFFLSQDDRFMIKTLRMSEVKVLLRMLPDYHHHVKTYENTLITKFFGLHRIKASSGQKFRFVVMGNMFCTELRIHRRFDLKGSSFGRSSDKIEIDENTTLKDLDLNYCFYLEPSWRESLLKQIEIDSKFLEAQHIMDYSLLLGVHYRAPQHLRPLISYNQSRSVDGLAMLAEEDPLEDEASYPQGLVLVPRGADDNSVVVGSHVRGSRLRASSAGDEEVDLLLPGTARLQIQLGVNMPSRAEQISEKEEKPKFQEVYDVVLYLGIIDILQDYNMTKKIEHAYKSLQFDSLSISAVDPTFYSRRFLEFIQKVFPPNAMAGG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02460 422 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 4 414 IPR023610 -
Vimu6g02460 422 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 86 412 IPR002498 GO:0016307|GO:0046488
Vimu6g02460 422 SUPERFAMILY SAICAR synthase-like 10 414 - -
Vimu6g02460 422 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 2 168 IPR027484 -
Vimu6g02460 422 CDD PIPKc_AtPIP5K_like 2 413 - -
Vimu6g02460 422 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1 414 IPR002498 GO:0016307|GO:0046488
Vimu6g02460 422 SMART PIPK_2 27 415 IPR002498 GO:0016307|GO:0046488
Vimu6g02460 422 Gene3D - 169 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02460 Vimu-Chr6 21408782 21415443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02460 2 417 Acyl Lipid Metabolism Gene Families AT3G09920 78.043 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02460 K00889 - gmx:100800418 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02460 6 21408782 21415443 Vimu6g02460 6 21408782 21415443 ECH
Vimu6g02460 6 21408782 21415443 Vimu3g01191 3 20285936 20305392 PCT