Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01191 ATGTCTGGCCCTGTGGCCATAGTTGGTAATTTGGATGGAGCACTTTCTTGTGCAGAGAGAACAAAATCTCTTGATGCCATTTCTGAAATAGACCGTGTATCTATATTGACAAACGGTGAAGCTGGTCATTCCTCTGAAGTTGCTGGATTTAGAGTTGGGGAACTCGCGCTTCCTAATGGAGAGTCATATTGTGGGTCCCTTCTTGGTAACATTCCAGAGGGTCAGGGTAAGTATGTATGGTCAGATGGTTGTGTATATGATGGTGAGTGGAGACGGGGGATGAGAAATGGATTTGGGAAAATACAATGGCCTTCTGGAGTAATGTATGAAGGTGAGTTCTCAGGTGGCTATATCCATGGTACAGGAACGTATATTGGTCCGGATAATCTGACCTACAATGGTCGGTGGCGATTAAATCTTAAACATGGGTTGGGTTATCAAGTTTATCCAAATGGAGATATCTTTGAAGGCTCTTGGATCCAAGGAACACCGGAGGGTCCAGGCAAGTATACGTGGGCCAATGGAAATGTATATTTGGGAAATATGAAAGGTGGGAGAATGTCAGGAAAAGGAACTCTCACCTGGGTAAGTGGGGACTCATTTGAAGGGAGCTGGCTAAATGGGATGATGCATGGGCTTGGGGTATATACATGGAGTGATGGAGGCTGCTATGTTGGGACTTGGACACGGGGTCTAAAAGATGGCAAAGGAACCTTCTATCCAAAAGGTAGCTGTCTTCCAACTGCACAAGAAATATATCTAAATGCATTGAGAAAAAGAGGGCTGTTGCCAGATCTGAGAAAACAGAAACAGGTACATATTCATCATGCTGCTTCAGTTGATATGGGAGATGTCAAGGTTGGCGAGAGTCAGAGATTGAGTAGTGTTTCATCTGATAAGCTGGCTAAAGGAAACCTGCTAAATCTGGAACAATCTCGCAGTAAAAATATTTCTCTTGAAAGGCGCTGGAGTCTTGAGGTATCTATTGAGAAAGTAATTGGAAACGATTCAAAACTAGGATCAACAGATTCTATCGCTGAAAATGGAGATAAAGTCCCAATTTTGGAACGCGAGTACATGCAAGGTGTGTTAATAAGCGAGTTAGTTTTAAATAATAAATTTTCATCAATGTCTAGAAAGGCAAAACAGCTTCAAAAAAAACTTGCCAAAGAAATTAAAAGACCTGGTGAAGCGATCATTAAAGGTCACAGGAGCTATGATCTGATGCTTAGTTTGCAGCTTGGAATAAGGTATACTGTGGGAAAAATTACACCAATACAGAGGCGAGAAGTTCGAGCATCAGATTTTGGTCCTAGAGCAAGCTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAGTCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTGTTCAGGAATTTGAGAGAGTTGTTCAAGATTGATGCTGCTGACTATATGATGTCCATTTGTGGAAATGATGCTCTGAGGGAGCTTTCTTCCCCAGGAAAAAGTGGTAGTGTCTTTTTCCTGTCTCAGGATGATCGATTCATGATTAAGACACTGCGTAGATCTGAAGTGAAGGTTCTTCTTAGAATGCTTCCTGACTATCATCATCATGTGAAGACATATGATAATACGCTTATCACAAAATTTTTTGGTCTGCACAGGATTATACCTTCCAGTGGTCAAAAGTTTCGCTTTGTTGTGATGGGAAATATGTTCTGCACAGAATTAAGGATCCATAGGAGATATGATTTGAAAGGTTCATCGTGTGGACGTTCTTCTGACAAGATAGAAATTGATGAGAACACTACTCTTAAAGATTTGGATTTGAACTACTGCTTTTACTTGGAACCATCTTGGCGGGAGTCTTTATTGAAGCAGATTGAGATTGATAGCAAGTTCTTGGAATTACAACAGATAATGGATTACAGCCTCCTTCTTGGTGTTCATTATCGAGCTCCCCAGCAGCTGCATCCATACAACCAAAGTAGAACTGTAGATGGATTGGCAATTCTTGCAGAGGAAGACCCTCTAGAGGATGAAGCATCCAACTATCCGCAAGGTCTTGTTCTGGTCCCTCGAGGTGCAGATGATGATAGCGTTGTTGTAGGGTCACACATTAGGGGAAGCAGATTGAGAGCTTCAGCTGCTGGTGACGAGGAGGTGGATCTACTTCTACCTGGTACTGCAAGACTACAAATCCAGCTTGGTGTGAACATGCCTGCCAGGGCAGAGCAGATTCCAGGGAAAGAGGAAGTGGAAATGTTCCATGAAGCTTACGACGTCGTACTTTACCTAGGTATAATTGACATATTGCAAGAGTACAACATGACTAAGAAGATTGAACATGCATATAAATCTATTCAGTTTGATTCATTATCTATCTCGGCGGTGGACCCTACATTCTACTCACGTCGCTTCCTAGATTTTATTCAGAAAGTGTTCCCACCACATGAAATGGCAGGATAA 2475 0.4198 MSGPVAIVGNLDGALSCAERTKSLDAISEIDRVSILTNGEAGHSSEVAGFRVGELALPNGESYCGSLLGNIPEGQGKYVWSDGCVYDGEWRRGMRNGFGKIQWPSGVMYEGEFSGGYIHGTGTYIGPDNLTYNGRWRLNLKHGLGYQVYPNGDIFEGSWIQGTPEGPGKYTWANGNVYLGNMKGGRMSGKGTLTWVSGDSFEGSWLNGMMHGLGVYTWSDGGCYVGTWTRGLKDGKGTFYPKGSCLPTAQEIYLNALRKRGLLPDLRKQKQVHIHHAASVDMGDVKVGESQRLSSVSSDKLAKGNLLNLEQSRSKNISLERRWSLEVSIEKVIGNDSKLGSTDSIAENGDKVPILEREYMQGVLISELVLNNKFSSMSRKAKQLQKKLAKEIKRPGEAIIKGHRSYDLMLSLQLGIRYTVGKITPIQRREVRASDFGPRASFWMNFPKEGSQLTPPHQSEGFKWKDYCPMVFRNLRELFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRRSEVKVLLRMLPDYHHHVKTYDNTLITKFFGLHRIIPSSGQKFRFVVMGNMFCTELRIHRRYDLKGSSCGRSSDKIEIDENTTLKDLDLNYCFYLEPSWRESLLKQIEIDSKFLELQQIMDYSLLLGVHYRAPQQLHPYNQSRTVDGLAILAEEDPLEDEASNYPQGLVLVPRGADDDSVVVGSHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNMPARAEQIPGKEEVEMFHEAYDVVLYLGIIDILQEYNMTKKIEHAYKSIQFDSLSISAVDPTFYSRRFLDFIQKVFPPHEMAG 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01191 824 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 72 818 IPR023610 -
Vimu3g01191 824 SUPERFAMILY SAICAR synthase-like 401 817 - -
Vimu3g01191 824 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 172 243 - -
Vimu3g01191 824 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 491 815 IPR002498 GO:0016307|GO:0046488
Vimu3g01191 824 Gene3D - 207 247 - -
Vimu3g01191 824 Gene3D - 88 137 - -
Vimu3g01191 824 Gene3D - 138 206 - -
Vimu3g01191 824 SMART PIPK_2 432 818 IPR002498 GO:0016307|GO:0046488
Vimu3g01191 824 PIRSF PIP5K_plant 10 821 IPR017163 GO:0005524|GO:0016308
Vimu3g01191 824 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 402 817 IPR002498 GO:0016307|GO:0046488
Vimu3g01191 824 SMART morn 84 105 IPR003409 -
Vimu3g01191 824 SMART morn 153 174 IPR003409 -
Vimu3g01191 824 SMART morn 176 197 IPR003409 -
Vimu3g01191 824 SMART morn 61 82 IPR003409 -
Vimu3g01191 824 SMART morn 130 151 IPR003409 -
Vimu3g01191 824 SMART morn 107 128 IPR003409 -
Vimu3g01191 824 SMART morn 199 220 IPR003409 -
Vimu3g01191 824 SMART morn 222 243 IPR003409 -
Vimu3g01191 824 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 391 573 IPR027484 -
Vimu3g01191 824 FunFam Phosphatidylinositol 4-phosphate 5-kinase 391 573 - -
Vimu3g01191 824 Gene3D - 574 817 - -
Vimu3g01191 824 Pfam MORN repeat 86 106 IPR003409 -
Vimu3g01191 824 Pfam MORN repeat 224 244 IPR003409 -
Vimu3g01191 824 Pfam MORN repeat 63 85 IPR003409 -
Vimu3g01191 824 Pfam MORN repeat 178 199 IPR003409 -
Vimu3g01191 824 Pfam MORN repeat 155 177 IPR003409 -
Vimu3g01191 824 Pfam MORN repeat 201 222 IPR003409 -
Vimu3g01191 824 Pfam MORN repeat 132 153 IPR003409 -
Vimu3g01191 824 Pfam MORN repeat 109 129 IPR003409 -
Vimu3g01191 824 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 58 185 - -
Vimu3g01191 824 CDD PIPKc_AtPIP5K_like 405 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01191 Vimu-Chr3 20285936 20305392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01191 10 818 Acyl Lipid Metabolism Gene Families AT3G09920 74.512 0.0 1259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01191 K00889 - gmx:100805371 1613.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01191 3 20285936 20305392 Vimu3g01191 3 20285936 20305392 ECH
Vimu6g02460 6 21408782 21415443 Vimu3g01191 3 20285936 20305392 PCT