Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02433 ATGCGCAGGGGATCACAAGAGCAACAATCACAGGATGGTTCCTCGCAGTCACAGTCGTGGTATCCACCATCAGTGGTAAGTTCACCAAGTTCGTCTAGGCCTGCTACACCGTCGGGATCTTCTTCTTCATTACCGCATAGGCCTTCTTCTCATGTTCCGCCCTCCGAAGCCGCTGGAATCATTGCTGTTTTGAAGGACAAGAGTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCATACCAGCAGTTTCTACATTCGCTTGATCAGGTCAAGATTCAAACTAATCTGAAAGATGAACTTTGCAAGGAGAATTTGCAGCTTGCAGTAGAGACTAAACTATTGCCTTCTACAGAGGAAAATCTTCAAAAGGAGCCTCGTATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACTGAGTTAGCTGCCGCTAAAGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGAAATGTTGAAACTGAATTCACCAGCGTCTCTTGTCCAGAGGATTCAAGAGTCTGCGAATAAGACTGAAGAGGAATCTGACAATCTACACCAGCATTTCCTTGACGGAGAGATTGATCTTGGGGCTTTCTTGCAAAAGTACAAGAAGCTACGTACCACTTACCACAAAAAGACTCTCATACATCTTGCTGCTAAAACATCAACTTTGATATTGGTCAAGGATACTTGCCACCTATTATACAAAGTTGCAGTCGCTGGGATACAGCAATCTACTATTAATGAGATTGTTCGTATATGTACCGCCTGTGATTGTTCATTGCAGTCACATTCTCGAGTGGTTTCAACAGAGATGAGGATTGTTGAGCTTGACACCAGACTTTCCACCACCGAAGTCAGTGGGGATGTTGCAAACGTTATCTGGAGAAGACACCAACCTCACCGAGCATCGTTTTGTATCCAATTCCTTGCCATAGACATACTTTTTCACACTCAAGTCGTATTGCCCTAA 984 0.4339 MRRGSQEQQSQDGSSQSQSWYPPSVVSSPSSSRPATPSGSSSSLPHRPSSHVPPSEAAGIIAVLKDKSVDELRKLLSDKDAYQQFLHSLDQVKIQTNLKDELCKENLQLAVETKLLPSTEENLQKEPRIMELRNQCRIIRTTELAAAKEKLNELEKQKEEMLKLNSPASLVQRIQESANKTEEESDNLHQHFLDGEIDLGAFLQKYKKLRTTYHKKTLIHLAAKTSTLILVKDTCHLLYKVAVAGIQQSTINEIVRICTACDCSLQSHSRVVSTEMRIVELDTRLSTTEVSGDVANVIWRRHQPHRASFCIQFLAIDILFHTQVVLP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02433 327 MobiDBLite consensus disorder prediction 1 54 - -
Vimu6g02433 327 MobiDBLite consensus disorder prediction 7 49 - -
Vimu6g02433 327 Pfam Modifier of rudimentary (Mod(r)) protein 65 218 IPR009851 -
Vimu6g02433 327 Gene3D Helix hairpin bin 152 221 IPR029012 -
Vimu6g02433 327 Coils Coil 171 191 - -
Vimu6g02433 327 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 13 226 - -
Vimu6g02433 327 ProSiteProfiles VPS37 C-terminal domain profile. 148 237 IPR009851 -
Vimu6g02433 327 Coils Coil 137 164 - -
Vimu6g02433 327 SUPERFAMILY Endosomal sorting complex assembly domain 166 216 IPR037202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02433 Vimu-Chr6 21216787 21221705 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02433 K12185 - gmx:100779019 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02433 6 21216787 21221705 Vimu6g02433 6 21216787 21221705 ECH
Vimu6g02433 6 21216787 21221705 Vimu3g00917 3 11120400 11121274 PCT