Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00917 ATGGGGGCTCCTAGCAGGATTTTGAAGTTTATAAATGCTGTGGGGTTAACTGATGTTTTTAGATGGACATTACTCGATGTAATGTCCCATCCTCACACCACCACCACCATCGATGTCAATGCCGAAAACTCTATTGTTGTGACAGATGAACTTTGCAAGGAGAATCTGCAGCTTGCTGCTGAATATTTTAGATCATCTCAAACAATTTATATTTTAAATTCAGACGAAAATCTACGAAAAGAACCTCGCATTGTGGAACTCAGTAACCAGTATAGAATAATTTGTACGACTGAGTTAGCTGCTGCTCAAGAGAAACTAAATGAGCTTTACAGGCAGAAAGAGGAAATAACGAAGTTGAATTCCCCATTGTACCTTCTCCAAAGGATTCAAGAGGCTATGAATAAGACAGATGAGGAATCCGAAAATCTGCACCATCAATTCCTTGACAGAGAGATTGACCTTGGAGCCTTTTTGCAGAAATACAAAAAGCTACGTACCGCTTACCACAGGAAAAGTCTAATAAATCTTGCAGCTAAAACATCAAATATATGA 552 0.3877 MGAPSRILKFINAVGLTDVFRWTLLDVMSHPHTTTTIDVNAENSIVVTDELCKENLQLAAEYFRSSQTIYILNSDENLRKEPRIVELSNQYRIICTTELAAAQEKLNELYRQKEEITKLNSPLYLLQRIQEAMNKTDEESENLHHQFLDREIDLGAFLQKYKKLRTAYHRKSLINLAAKTSNI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00917 183 Coils Coil 99 119 - -
Vimu3g00917 183 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 75 181 - -
Vimu3g00917 183 Gene3D Helix hairpin bin 103 176 IPR029012 -
Vimu3g00917 183 ProSiteProfiles VPS37 C-terminal domain profile. 103 183 IPR009851 -
Vimu3g00917 183 Pfam Modifier of rudimentary (Mod(r)) protein 48 172 IPR009851 -
Vimu3g00917 183 Coils Coil 126 146 - -
Vimu3g00917 183 SUPERFAMILY Endosomal sorting complex assembly domain 122 171 IPR037202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00917 Vimu-Chr3 11120400 11121274 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00917 K12185 - gmx:100797771 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00917 3 11120400 11121274 Vimu3g00917 3 11120400 11121274 ECH
Vimu6g02433 6 21216787 21221705 Vimu3g00917 3 11120400 11121274 PCT