Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02429 ATGCGGGCCTCCGTTTGCCTGTGGCTCGCGTTAGCTACCGTCGCGTTGTCTGCGGCGCTGGTGCACGGCGGTTTGACGGGGACATTTCTTTCTCTGGAACGGGCCATTCCTCTGAACCAACGAGTGGAGTTAGAGTCGCTGAGAGCTCGCGACAGAGCACGCCACGGTCGAATCTTGCAAGGTGTCTTTGGTGGCGTTGTCGACTTCGCCGTCCAGGGAACCTCCGATCCTTACTTCGTTGGGTACGGGCTCTATTTCACGAAAGTGAAGTTGGGATCGCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATATTGTGGCTGAATTGCATGACTTGCAGTAATTGTCCTCAATCTAGTGGGTTAGGGATTCAGCTGGATTTCTTTGACACGGCCGGCTCATCCACTGCTGCGTTTGTTTCCTGCGCTGATCCAATATGTTCTTATGCGGTTCGAACTGCGACAAGTGAATGCTCTTCTCAGGCTAATCATTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACAACTGGTTATTATGTTTCTGATACGATGTATTTTGACACAGTCGTGGGACAGGAATTGGTTTCTAATTCTTCATCTACCATCGTTTTTGGGTGTAGCACCTACCAGTCTGGGGATTTGACCAAAACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGTCCTGGTGCTCTATCTGTTATATCACAATTGTCATCACAGGGTCTGACACCCAAAGCGTTCTCTCATTGCCTAAAAGGACAAGACAATGGAGGAGGTGTGTTAGTTCTCGGTGAAATTTTGGAGCCAAGTATTGTTTATAGCCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTTAATGGTCAAATTCTCCCAATTGATTCAGATGTATTTGCGACAACTAATAATCGAGGAACTATAGTTGACACTGGAACGACATTGGCATACCTTGTTGAAGAAGCATACAATCCTTTTGTCGATGCTATAACTGCTGCTGTGTCACAGTTCTACAAACCTATTATTTCAAAAGGAAACCAGTGTTATCTGGTATCAAACAGCGTAGGTGATATATTTCCTCAAGTCAGTTTAAACTTCATGGGTGGGGCATCTATGATTTTAGATCCAGAACATTACCTTATGCATTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCATTGGCTTCCAAAGAACGGACCAGAGATTCATCATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTATACGACTTAGCTAATCAACGAATTGGATGGGCCAACTATGACTGTTCCTTGGCTGTAAACGTCTCTATGGCTACGAGCAAGAGCAAAGATGCATACATCAACAATTCAGGACCCATGAGTGTGGGCTGCCCCCACATAGGCACTTTCTCCAAGTTGCTAGCATCAGGCATTGCTGCTTTCCTTGTGCACATAGTTTTCATGGATTTCCCATTTTTGTAA 1503 0.4498 MRASVCLWLALATVALSAALVHGGLTGTFLSLERAIPLNQRVELESLRARDRARHGRILQGVFGGVVDFAVQGTSDPYFVGYGLYFTKVKLGSPAKEFYVQIDTGSDILWLNCMTCSNCPQSSGLGIQLDFFDTAGSSTAAFVSCADPICSYAVRTATSECSSQANHCSYTFQYGDGSGTTGYYVSDTMYFDTVVGQELVSNSSSTIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSQGLTPKAFSHCLKGQDNGGGVLVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQILPIDSDVFATTNNRGTIVDTGTTLAYLVEEAYNPFVDAITAAVSQFYKPIISKGNQCYLVSNSVGDIFPQVSLNFMGGASMILDPEHYLMHYGFLDGAAMWCIGFQRTDQRFIILGDLVLKDKIFVYDLANQRIGWANYDCSLAVNVSMATSKSKDAYINNSGPMSVGCPHIGTFSKLLASGIAAFLVHIVFMDFPFL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02429 500 SUPERFAMILY Acid proteases 80 445 IPR021109 -
Vimu6g02429 500 FunFam Aspartic proteinase-like protein 2 66 271 - -
Vimu6g02429 500 CDD pepsin_A_like_plant 85 443 IPR034161 -
Vimu6g02429 500 PANTHER ASPARTYL PROTEASES 25 437 IPR001461 GO:0004190|GO:0006508
Vimu6g02429 500 ProSiteProfiles Peptidase family A1 domain profile. 85 439 IPR033121 -
Vimu6g02429 500 Gene3D Acid Proteases 272 449 IPR021109 -
Vimu6g02429 500 Pfam Xylanase inhibitor N-terminal 85 270 IPR032861 -
Vimu6g02429 500 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Vimu6g02429 500 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Vimu6g02429 500 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Vimu6g02429 500 FunFam Aspartic proteinase-like protein 2 272 450 - -
Vimu6g02429 500 Gene3D Acid Proteases 68 271 IPR021109 -
Vimu6g02429 500 Pfam Xylanase inhibitor C-terminal 288 439 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02429 Vimu-Chr6 21203582 21209948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02429 83 444 Miscellaneous Gene Families AT1G44130 27.461 2.43e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02429 - - gmx:100804147 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02429 6 21203582 21209948 Vimu6g02429 6 21203582 21209948 ECH
Vimu6g02429 6 21203582 21209948 Vimu3g00915 3 11098859 11103307 PCT