Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00915 ATGCGGTGTTGCATTCCTACGCTGTTGGCGGTGATCGCCGTGCTGGTGTCGGCGGTGCACGGCACTTTCCTCCCTCTCGAGCGGAGCATTCCTCTGAGCCACCGCACGGAGGTGGCGGAGCTGAGGGCTCGTGACAGAGCCCGCCACGCCCGAATGCTGAGCGGCATAGTCGACTTAACAGTCCAAGGAACCTCCGATCCAAACACGGTTGGGTTGTATTATACCAAAGTGAAGATGGGAACACCTCCTAAAGAATTTAACGTTCAGATTGATACGGGGAGTGATATATTATGGGTGAATTGCAATACTTGCAGTAATTGTCCCCAGTCTAGTGAACTAGGGATTGAGCTTAATTTCTTTGACACGGTTGGGTCGTCCACCGCTGCGTTGGTTTCCTGCGCGGACCCGATATGCACTACTGGGGTTCAAGGTGCTTCTGCTGAGTGCTCCACGAGGGCTAATCAATGCAGCTACTCCTTTAAGTATGGAGATGGAAGTGGGACTGCAGGTTATTATGTTTCGGATGCATTGTATTTTAACTTGATCGTGGGACAGCCTCCACTTCCACCGGTTAACTCTTCGGCTACCATTGTTTTTGGGTGTAGTATCTATCAGTCTGGAGATCTGACTAAGACAGATAAAGCAGTCGATGGAATTTTTGGGTTTGGTCCTGGTGCTCTATCTGTTGTATCGCAGTTGTCATCACGCGGAATAACACCCAAAGTCTTCTCTCATTGCTTGAAAGGAGATGGTGATGGAGGAGGCATTCTAGTTCTGGGCGAGATAAAGGAGTCAAGTATTGTTTATAGTCCACTTGTTCCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTCAATGGGAAACTCCTTCCAATTAACCCAGCTGTATTTGCAACGTCTAATGACCGAGGAACTATAGTTGACTGTGGTACGACGTTGGCATATCTTGTTCAAGAAGCTTATGATCCTCTAGTCACTGCTATAACTACTGCGGTGTCACAATCTGCTCAGCAAACTAATTCCAAAGGAAGCCAGTGTTATCTGGTCACAACCAGTATAGGTGACATTTTCCCTTTAGTCAGTTTAAATTTTGAGGGTGGAGCGTCAATGATTTTAAAACCAGAGCAGTACCTTATGTATAATGGTTACCGTGATGGTGCTGAAATGTGGTGTATCGGTTTCCAGAATGTACAGGAGGGTGTTTCAATTTTAGGAGATCTTGTCCTAAAAGATAAGATAGTTGTGTATGACTTGGCACATCAACGAATTGGATGGGCTAACTATGACTGTTCTTTGTCTGTAAATGTTTCTGTGACTACGAGCAAGGATGAATACATCAATGGGGGACAGCTAAGTGTCAACAGCTCCGCAATACGCGTTCTTTCTAATTTACTATCCGTGAGCATTGTGGCTCTGTCTTTGTACATAATGTTAGTATGA 1449 0.4576 MRCCIPTLLAVIAVLVSAVHGTFLPLERSIPLSHRTEVAELRARDRARHARMLSGIVDLTVQGTSDPNTVGLYYTKVKMGTPPKEFNVQIDTGSDILWVNCNTCSNCPQSSELGIELNFFDTVGSSTAALVSCADPICTTGVQGASAECSTRANQCSYSFKYGDGSGTAGYYVSDALYFNLIVGQPPLPPVNSSATIVFGCSIYQSGDLTKTDKAVDGIFGFGPGALSVVSQLSSRGITPKVFSHCLKGDGDGGGILVLGEIKESSIVYSPLVPSQPHYNLNLQSIAVNGKLLPINPAVFATSNDRGTIVDCGTTLAYLVQEAYDPLVTAITTAVSQSAQQTNSKGSQCYLVTTSIGDIFPLVSLNFEGGASMILKPEQYLMYNGYRDGAEMWCIGFQNVQEGVSILGDLVLKDKIVVYDLAHQRIGWANYDCSLSVNVSVTTSKDEYINGGQLSVNSSAIRVLSNLLSVSIVALSLYIMLV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00915 482 Gene3D Acid Proteases 262 440 IPR021109 -
Vimu3g00915 482 Pfam Xylanase inhibitor N-terminal 73 260 IPR032861 -
Vimu3g00915 482 CDD pepsin_A_like_plant 73 433 IPR034161 -
Vimu3g00915 482 Gene3D Acid Proteases 54 261 IPR021109 -
Vimu3g00915 482 SUPERFAMILY Acid proteases 70 436 IPR021109 -
Vimu3g00915 482 ProSiteProfiles Peptidase family A1 domain profile. 73 429 IPR033121 -
Vimu3g00915 482 PANTHER ASPARTYL PROTEASES 10 427 IPR001461 GO:0004190|GO:0006508
Vimu3g00915 482 FunFam Aspartic proteinase-like protein 2 56 261 - -
Vimu3g00915 482 Pfam Xylanase inhibitor C-terminal 278 429 IPR032799 -
Vimu3g00915 482 PRINTS Pepsin (A1) aspartic protease family signature 79 99 IPR001461 GO:0004190|GO:0006508
Vimu3g00915 482 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Vimu3g00915 482 PRINTS Pepsin (A1) aspartic protease family signature 405 420 IPR001461 GO:0004190|GO:0006508
Vimu3g00915 482 FunFam Aspartic proteinase-like protein 2 262 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00915 Vimu-Chr3 11098859 11103307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00915 70 434 Miscellaneous Gene Families AT1G44130 27.390 1.04e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00915 - - gmx:100820394 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00915 3 11098859 11103307 Vimu3g00915 3 11098859 11103307 ECH
Vimu6g02429 6 21203582 21209948 Vimu3g00915 3 11098859 11103307 PCT