Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02419 ATGGCTACTTCTGTTACATGGGGTTCAGGGCCATTTTCATCCACCAAGCTCTTTCTGTTCATGGTTCCTCTCGTGCTTGTTGCAGGGCTCGTTTCTGTTTTGGGTCCTAGCCCCTCTAGTTGGTTTTCCACTGCCAAGCCACCGCTGTTATTATTCAGCTCTGTTACTTCCTCAGCTGCTAGTAATGGTTCTGTGACCACCCCTTCTGAGGTGAAGCAGAGAGAAGAGTTGCTGGTGGTGGCCGTGGATAATCGTGCTGGAGAGAATCTTATCTCCAATTACACTCACTTCAATCTCTCCTCTACTCCTCCATTTTCTGTTCAGGCCATACAACAACATAGCAGGGATGAACAAAACGTTCCCCAAAATTTGGGCAACGTGAGTTCCGTGAACGAGTCTTATGTTCCGGCAGAAAGGCCAAAACTGCAAAGAAAATTCAGCATCTTAGACAGAAATGAAGCAGGTCTAATAAAAGCTCGAGCCGCAATTAGAGAAGCAAGAAACGGAAATCAAACGCAAGATACAGACTACGTTCCTATTGGACCAATGTACATGAATGCCAATGCATTTCACAGGAGTTACTTGGAAATGGAGAAACAGCTGAAAGTGTATGTGTACGAAGAAGGGGAGGCTCCAGTTTTTCATAACGGACCTTGCAAGAGCATATACTCGATGGAGGGGAATTTCATCCATGCTATTGAGATGAACGAGAAATTCCGAACGAGAGATCCTGAGAAAGCACATGTTTTTTTCTTACCTTTTAGTGTAACAATGATGGTCAAATTCGTGTATGTACGAGACTCTCGTGACTTTGGCCCCATAAAAAGAACTGTCAAGGATTACATCGACGTCATCGCAGGAAGATACCCCTATTGGAACAGAAGCCTTGGAGCTGATCATTTCTATCTTTCTTGCCACGATTGGGGGCCAGAGACTTCGCGCTCGGTTCCTAATTTGAGAGATAATTCGATACGCGTGTTGTGCAATGCTAACACTTCCGAGGGATTCAAGCCTTCGAAGGATGTCTCTTTGCCGGAAATTAACATCCGAAGTGGTTCCATAAACGATTTGATCGGTGGGCCGTCTGCTTCGAAGCGTCCACTCTTGGCCTTCTTTGCCGGTGGACTTCACGGCCCCGTTAGGCCGGTTCTTTTTGAACAGTGGGAAAACAAGGACGAGGACATAAAGGTTCATAAGTACCTTCCGAAGGGTGTGTCGTACTATGGGATGCTGAGGAAGAGCAGGTTCTGTCTTTGTCCCAGTGGGTACGAGGTGGCTAGTCCGAGAGTGGTGGAGGCAATCTACACAGGGTGTGTCCCAGTTCTGATTTCGGATCACTATGTTCCTCCGTTCAGTGATGTTTTGAATTGGAAGTCGTTTTCCGTTGAGGTTTCGGTTGAGGAGATTCCGAAATTGAAGGAAATTTTGTTGAGTATTTCTCCCACACAGTATATAAGAATGCAGAGGAGAGTGTTACAAGTTAGGAGGCATTTTGAGGTGCACTCTCCTCCCAAGAGATTCGATGTCTTTCACATGATTCTTCATTCTGTATGGCTTAGAAGATTGAACTTTAGAGTCCACGATCATCAATCACAACTGTCTTAG 1605 0.4567 MATSVTWGSGPFSSTKLFLFMVPLVLVAGLVSVLGPSPSSWFSTAKPPLLLFSSVTSSAASNGSVTTPSEVKQREELLVVAVDNRAGENLISNYTHFNLSSTPPFSVQAIQQHSRDEQNVPQNLGNVSSVNESYVPAERPKLQRKFSILDRNEAGLIKARAAIREARNGNQTQDTDYVPIGPMYMNANAFHRSYLEMEKQLKVYVYEEGEAPVFHNGPCKSIYSMEGNFIHAIEMNEKFRTRDPEKAHVFFLPFSVTMMVKFVYVRDSRDFGPIKRTVKDYIDVIAGRYPYWNRSLGADHFYLSCHDWGPETSRSVPNLRDNSIRVLCNANTSEGFKPSKDVSLPEINIRSGSINDLIGGPSASKRPLLAFFAGGLHGPVRPVLFEQWENKDEDIKVHKYLPKGVSYYGMLRKSRFCLCPSGYEVASPRVVEAIYTGCVPVLISDHYVPPFSDVLNWKSFSVEVSVEEIPKLKEILLSISPTQYIRMQRRVLQVRRHFEVHSPPKRFDVFHMILHSVWLRRLNFRVHDHQSQLS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02419 534 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 80 517 IPR004263 GO:0006486|GO:0016757
Vimu6g02419 534 Pfam Exostosin family 198 477 IPR040911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02419 Vimu-Chr6 21129983 21133222 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02419 - - gmx:100806278 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02419 6 21129983 21133222 Vimu6g02419 6 21129983 21133222 ECH
Vimu6g02419 6 21129983 21133222 Vimu3g00896 3 10836515 10840362 PCT