Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00896 ATGAAGGAAAAACTTTTATGGTCGATAAAAAGAGATGTTGTGATGTGGTTTTGTTCCACAGAGATAGTTGAGTTATCAGAAAGGATGAGTAGTGGAAAATGGAACTGTGCATGGTGGATTTCAGAGGAAGACCTTCAAACGATAAAGGTAGCGATATTTGTAGTGCCTCTGTTCGTGCTTACAGTGTTTGCCACTGTGAAGAATTCACACATTTGCAGATGGAGTTGGGATGTAAACTGTCATCAAACAGATACAGGATCTTATGTTCCATCTCCTCCTACCTTTCAAACTCAACTTCATCAATATAATGAAACTGGAGGATTCAATGTCTCCAAACCTTCGTTATATGAACCTTATGTGAACGAAACTAGTGAACCTCACTTACTAATGGGGCAAACCAGAAAGTCAAACATCTTAGAAGAAACCGAAATTGGTTTAGCAAAAGCTCGAGCTGCAATCAGAGAAGCCAGAAATGGAAATAGAACACAAGATTCAGATTATGTCCCTATAGGTCCAGTGTATCTGAATGCTAAGGCCTTTCACAGGAGCTACTTAGAAATGGAGAAACGGTTCAAAGTATTTGTGTATGGAGAAGGGGAACCTCGAATTTTCCTAAATCCACCATGCAAAAGTATACACTCCATTGAGGGTAACTTCATGCATGCTATTGAAAGGAATGACCATTTTCGAACTAAAGATCCGGAGAAAGCACATGTATTTTTCCTCCCTTTCAGTGTAGCAACGGAGCTTCGATATGGGTATGAAAGAGTCTCACAAGACTTTAGTCCCCAAAGAAACACTGTGATAGATTATGTCAATGTCATTGCTGCAAGATATCCTTATTGGAATCGAAGTCTTGGAGCTGATCACTTCACCCTTGCTTGCCATGACATGTGCCGAGGGACATCATTATCCTTACCTGATCCGCTCAAGAACTCTATTCTAGTACTTTGTAATGCCAACACAGTTGAAGGATTTAAGCCTGCAAAAGATGTTTCATTTCCTGAAATTAATCTCAAAACCGGTTCAACAAACAGCTTCATTGGTGGGTCATCTGCATCTAAACGTTCAGTTTTGGCTTTCTTTGCTGGGGAAGTTCAGGGGGCCGTCATTCCAGTTCTCCTTAAGCATTGGGAAAACAAGGATGAAGATATTCAGGTTCAGAAGTATCTCGAAGAGGGTATTTCTTACCATGAGATGATGAGGAAGAACAAGTTTTGCCTATGTCCAAGTGGGTCTGAGGTGGCCAGCGCTAGAGTGGTGGAGGCAATTTACAGTGGGTGTGTTCCTGTGCTGATTTCCGAGCACTATGTCCCTCCTTTCAGTGATGTTTTGAATTGGAAGTCATTTTCAGTTGAGGTTTCAGTGAAGGACATTCCTAACTTGAAGGAGATCTTGAAGAGTATTTCTCCAAGACAATACATAAGAATGCAGAGAAGAGTGAAACAAATTAGAAGACACTTTGAAGTACATTCTCCTCCAAAGCGATTTGATGTGTTTCACATGATCCTTCATTCTGTGTGGCTTAAGAGACTCAACTTCAAAGTTCACCATGATCAAAATGTCTTAAGTGAGTAA 1578 0.4056 MKEKLLWSIKRDVVMWFCSTEIVELSERMSSGKWNCAWWISEEDLQTIKVAIFVVPLFVLTVFATVKNSHICRWSWDVNCHQTDTGSYVPSPPTFQTQLHQYNETGGFNVSKPSLYEPYVNETSEPHLLMGQTRKSNILEETEIGLAKARAAIREARNGNRTQDSDYVPIGPVYLNAKAFHRSYLEMEKRFKVFVYGEGEPRIFLNPPCKSIHSIEGNFMHAIERNDHFRTKDPEKAHVFFLPFSVATELRYGYERVSQDFSPQRNTVIDYVNVIAARYPYWNRSLGADHFTLACHDMCRGTSLSLPDPLKNSILVLCNANTVEGFKPAKDVSFPEINLKTGSTNSFIGGSSASKRSVLAFFAGEVQGAVIPVLLKHWENKDEDIQVQKYLEEGISYHEMMRKNKFCLCPSGSEVASARVVEAIYSGCVPVLISEHYVPPFSDVLNWKSFSVEVSVKDIPNLKEILKSISPRQYIRMQRRVKQIRRHFEVHSPPKRFDVFHMILHSVWLKRLNFKVHHDQNVLSE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00896 525 Pfam Exostosin family 188 469 IPR040911 -
Vimu3g00896 525 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 100 507 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00896 Vimu-Chr3 10836515 10840362 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00896 - - vun:114190677 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00896 3 10836515 10840362 Vimu3g00896 3 10836515 10840362 ECH
Vimu6g02419 6 21129983 21133222 Vimu3g00896 3 10836515 10840362 PCT