Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02408 ATGCATTCCAGTCACTTACTTATCGAGGAACCCATTCGTATGGTTTCCATTCTCGAACCATCTAAGGCCAGTTTCTTTCCCGCAATGACGAAGATTGTTGGTACGCTCGGTCCCAAATCTCGATCGGTTGAGGTAATGTTGGACACGGTGGGAGCAGAGATGCAGGTTGTTAACAAAAGTGAGAAATCTATCTCGCTCCAGGCTGATGCTCAGGTTGTTCTGACTCCTGACCGGGGACAAGAAGCATCTTCACAGATACTGCCTATCAATTATGATGGGCTGGCAAAGTCAATGAAGAAGGGTGACACAATTTTTGTTGGTCAATACTTGTTCACGGGAAGTGAAACTACTTCTGTATGGCTAGAGGTGTCCGAAGTTACAGGTCAAGACGTTGTTTGTACTATAAAGAATTCAGCAACATTAGCAGGGTCATTGTTCACTTTGCATGCCTCTCAGGTTCATATTGATTTGCCTACCCTCACTGATAAAGACAAGGAGGTTATAAGCACCTGGGGAGTAAAAAACAAAATTGATTTTCTATCATTGTCATATACTAGGCATGCTGAAGATGTTCGCCAGGCCCGTGAATTCCTTTCTAAGTTAGGAGATCTAAGGCAGACTCATATATTTGCAAAGATTGAAAATGTTGAGGGATTGACCCATTTTGATGAAATTCTACAAGAAGCAGATGGTATTATTCTTTCCCGTGGGAATTTGGGCATTGATCTTCCCCCAGAGAAGGTATTTTTCTTTCAAAAATCAGCCCTTTACAAGTGTAATATGGCTGGGAAACCTGCTGTGCTTACACGCGTTGTGGATAGCATGACTGACAACTTAAGACCAACTCGTGCAGAAGCCACTGATGTTGCCAATGCTGTTTTAGATGGGAGTGATGCAATACTACTAGGTGCTGAGACTTTACGTGGGTTATACCCTGTTGAGACAATTTCTACAGTTGGCAGAATTTGTGCAGAAGCCGAGAAAGTTTTTAATCAAGACCTTTATTTTAAGAAAACTGTCAAATATGTTGGAGAACCCATGTCCCACTTAGAATCTATTGCCTCTTCTGCGGTACGGGCAGCTATTAAGGTGAAAGCTTCTGTTATTATTTGCTTCACTTCATCTGGAAGGGCCGCAAGATTGATAGCAAAATATAGGCCAACCATGCCAGTTCTCTCTGTTGTGATCCCCCGACTCAAGACAAATCAGCTGAAATGGAGCTTTAGCGGAGCTTTTGAGGCTAGGCAATCACTTATTGTAAGATGTCTCTTTCCCATACTTGCCGATCCTCGACATCCTGCCGAGTCAACTAGTGCCTCAAACGAGTCTATTCTAAAGGTTGCCCTTGATCATGGAAAAACAGCTGGGGTTATAAAGTCGCACGATCGTGTAGTTGTTTGCCAGAAAGTTGGTGATTCATCTGTGGTTAAGATTATCGAGCTTGAAGATTAA 1452 0.4284 MHSSHLLIEEPIRMVSILEPSKASFFPAMTKIVGTLGPKSRSVEVMLDTVGAEMQVVNKSEKSISLQADAQVVLTPDRGQEASSQILPINYDGLAKSMKKGDTIFVGQYLFTGSETTSVWLEVSEVTGQDVVCTIKNSATLAGSLFTLHASQVHIDLPTLTDKDKEVISTWGVKNKIDFLSLSYTRHAEDVRQAREFLSKLGDLRQTHIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFFFQKSALYKCNMAGKPAVLTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRCLFPILADPRHPAESTSASNESILKVALDHGKTAGVIKSHDRVVVCQKVGDSSVVKIIELED 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02408 483 Gene3D - 317 480 IPR036918 -
Vimu6g02408 483 PRINTS Pyruvate kinase family signature 285 303 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu6g02408 483 PRINTS Pyruvate kinase family signature 41 57 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu6g02408 483 PRINTS Pyruvate kinase family signature 304 320 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu6g02408 483 PRINTS Pyruvate kinase family signature 236 260 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu6g02408 483 PRINTS Pyruvate kinase family signature 209 235 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu6g02408 483 PRINTS Pyruvate kinase family signature 177 191 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu6g02408 483 Gene3D - 40 316 IPR040442 -
Vimu6g02408 483 SUPERFAMILY PK beta-barrel domain-like 59 142 IPR011037 -
Vimu6g02408 483 Gene3D - 52 158 IPR015806 GO:0004743|GO:0006096
Vimu6g02408 483 PANTHER PYRUVATE KINASE 42 468 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu6g02408 483 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 6 334 IPR015813 GO:0003824
Vimu6g02408 483 SUPERFAMILY PK C-terminal domain-like 314 478 IPR036918 -
Vimu6g02408 483 FunFam Pyruvate kinase 52 158 - -
Vimu6g02408 483 Pfam Pyruvate kinase, alpha/beta domain 351 475 IPR015795 -
Vimu6g02408 483 Pfam Pyruvate kinase, barrel domain 41 331 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu6g02408 483 FunFam Pyruvate kinase 327 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02408 Vimu-Chr6 21076283 21084084 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02408 K00873 - gmx:100807864 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02408 6 21076283 21084084 Vimu6g02408 6 21076283 21084084 ECH
Vimu6g02408 6 21076283 21084084 Vimu3g00886 3 10663919 10672593 PCT