Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00886 GGAAAACTAACGCAACTATTCAATCATCGAACTGTGTTCCTTGCGTTTTGGTTTTCTCAAGGTTTTGTTGCGGCTGAAGTAGTGTTCGTCGATCGATCTTCAAACATGCCTTCTAGTCACTTGCTTCTCGAGGAACCCATTAGGATGGTCTCCCTCCTTGAGCCATCCAAGCCTAGTTTTTTCCCCGCAATGACAAAGATTGTTGGTACTCTGGGTCCTAAATCTAGATCTGTTGAAACTATTTCTAATTGTCTCAAAGCTGGGATGTCTGTGGCTCGATTTGACTTCTCGTGGCATGACCCTGAGTATCATCAGGAGACTTTGGAAAATTTGAAGGTTGCTATCAAGACTACAAAGAAGCTGTGTGCTGTTATGCTGGACACAGTGGGTGCAGAGATGCAAGTTGTTAACAAAAGTGAAAAAGCTATCTCTCTTGAGGCAAATGGTCAGGTTGTTCTAACTCCTGATGCCGGGCAAGAAGCTTCTTCTGAAATACTGCCAATCAATTTTGATGGGCTGGCTAAGGCTGTGAAGAAGGGAGACACCATTTTTATTGGTCAATACTTGTTCACAGGAAGTGAAACTACTTCTGTATGGCTAGAGGTATCTGAAGTCAAAGGCCAAGATGTTGTTTGCATTATAAAGAATTCGGCTACGTTGGCTGGGTCACTCTTCACTTTGCATGGCTCTCAAATTCATATTGATTTGCCCACTCTCACTGAGAAAGACAAGGAGGTTATAAGCACATGGGGAGTTAAAAACAAAATTGATTTTCTGTCCTTGTCGTATACTCGACACGCTGAAGATGTTCGCCAGGCACGTGAATTCCTTTCAAAGTTAGGTGATATCAGTCAGACTCAAATTTTTGCAAAGATTGAAAATGTTGAGGGATTGACTCATTTTGATGAGATTTTACAAGAAGCTGATGGAATTATCCTTTCCCGTGGAAATTTGGGGATTGATCTTCCACCAGAGAAGGTGTTTTTATTTCAAAAATCTGCCCTTTACAAGTGTAATATGGCTGGGAAGCCTGCTGTGCTTACACGTGTGGTGGATAGCATGACTGACAACTTGAGACCAACTCGTGCTGAAGCCACTGATGTTGCCAATGCCGTTTTAGATGGAAGTGATGCTATACTTCTGGGTGCTGAGACTTTACGTGGATTGTACCCTGTTGAGACTATTTCTACTGTTGGCAGAATTTGTTCAGAGGCTGAGAAAGTTTTCAATCAAGACCTTTATTTTAAGAAGACTGTCAAGTATGTTGGAGAACCCATGTCCCACCTGGAATCTATTGCATCCTCTGCGGTACGAGCTGCAATTAAAGTGAAGGCATCTATTATTATTTGTTTTACTTCATCTGGAAGGGCTGCGAGATTAATTGCTAAATATAGGCCAACGATGCCAGTTCTATCTGTTGTGATACCTCGACTAAAGACGAATCAGCTACGGTGGAGCTTTAGCGGAGCTTTTGAGGCAAGACAATCACTTATTGTGAGGGGTCTCTTTCCTATGCTAGCAGATCCTCGACATCCAGCTGAGTCAACAAGTGCAACAAATGAGTCTATACTTAAGGTTGCCCTTGATCATGGAAAAGCATTGGGAGTAATAAAGTCACACGACCGGGTAGTTGTTTGCCAGAAACTTGGTGATGCATCTGTGGTTAAGATTATTGAGCTTGAAGATTAA 1689 0.4233 GKLTQLFNHRTVFLAFWFSQGFVAAEVVFVDRSSNMPSSHLLLEEPIRMVSLLEPSKPSFFPAMTKIVGTLGPKSRSVETISNCLKAGMSVARFDFSWHDPEYHQETLENLKVAIKTTKKLCAVMLDTVGAEMQVVNKSEKAISLEANGQVVLTPDAGQEASSEILPINFDGLAKAVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGQDVVCIIKNSATLAGSLFTLHGSQIHIDLPTLTEKDKEVISTWGVKNKIDFLSLSYTRHAEDVRQAREFLSKLGDISQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKSALYKCNMAGKPAVLTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISTVGRICSEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASIIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLRWSFSGAFEARQSLIVRGLFPMLADPRHPAESTSATNESILKVALDHGKALGVIKSHDRVVVCQKLGDASVVKIIELED 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00886 562 NCBIfam pyruvate kinase 65 552 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g00886 562 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 41 410 IPR015813 GO:0003824
Vimu3g00886 562 FunFam Pyruvate kinase 131 237 - -
Vimu3g00886 562 PANTHER PYRUVATE KINASE 61 546 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g00886 562 Pfam Pyruvate kinase, alpha/beta domain 430 557 IPR015795 -
Vimu3g00886 562 Gene3D - 65 405 IPR040442 -
Vimu3g00886 562 Pfam Pyruvate kinase, barrel domain 65 410 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g00886 562 PRINTS Pyruvate kinase family signature 256 270 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g00886 562 PRINTS Pyruvate kinase family signature 315 339 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g00886 562 PRINTS Pyruvate kinase family signature 364 382 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g00886 562 PRINTS Pyruvate kinase family signature 120 136 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g00886 562 PRINTS Pyruvate kinase family signature 288 314 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g00886 562 PRINTS Pyruvate kinase family signature 383 399 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g00886 562 SUPERFAMILY PK C-terminal domain-like 393 550 IPR036918 -
Vimu3g00886 562 SUPERFAMILY PK beta-barrel domain-like 138 221 IPR011037 -
Vimu3g00886 562 Gene3D - 406 548 IPR036918 -
Vimu3g00886 562 Gene3D - 131 237 IPR015806 GO:0004743|GO:0006096
Vimu3g00886 562 FunFam Pyruvate kinase 406 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00886 Vimu-Chr3 10663919 10672593 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00886 K00873 - gmx:100802271 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00886 3 10663919 10672593 Vimu3g00886 3 10663919 10672593 ECH
Vimu6g02408 6 21076283 21084084 Vimu3g00886 3 10663919 10672593 PCT