Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02399 ATGGATCGTTTTTCTTCCAGTACCGTTATCCCTGAAGCGTTCCAAGGGGCCAAAGATGACCTCACCACACAGCTTGCATTGGTTTGGAATCAAATCAAAGCGCCATTGATTGTCCCGTTGCTGAGACTGGCAGTGTTTCTGTGCTTGATCATGTCGGTGATGATGTTCGTTGAGAGGGTCTACATGGGCGTTGTCATAACTCTGGTGAAGTTGTTCGGGAGAAAGCCCGAGAAACGTTACAAATGGGAGCCAATGAAGGACGACATAGAGTTGGGAAACTCTTCTTACCCAATGGTTCTCGTTCAAGTCCCCATGTACAACGAAAGAGAGGTTTATCAGCTCTCCATCGGAGCTGCTTGTGGGCTTTCTTGGCCTTCGGATAGGATCATCATACAAATCCTTGATGACTCCACTGACCCAACAATCAAGGAGATGGTGCAGCTTGAATGTCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGATTAGAGACAACAGGAATGGGTACAAAGCAGGGGCTCTCAAAGAAGGCATGAAGCGTAGCTACGTGAAACAATGTGATTGTGTTGCAATCTTTGACGCTGATTTTCAACCAGAGCCTGACTTCTTGTGGCGGACCATCCCATTCTTAGTGCACAATCCCGAACTAGCTCTCATTCAAGCTCGGTGGAAATTTGTGAATTCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCATTGGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGATTCAACGGGACTGCGGGAGTGTGGAGAATATCTGCATTGAATGAGGCTGGTGGATGGAAGGATAGGACCACAGTGGAAGATATGGACTTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCTGACTTGAAGGTTAAAAATGAATTGCCAAGCACTCTCAAGGCCTACCGTTACCAGCAGCACCGTTGGTCTTGTGGTCCAGCCAATCTTTTTAGAAAAATGGTCTTGGAGATCATAAACAACAAGAAAGTGTCATTGTGGAAGAAAATACACGTGATATACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACCTTTGTGTTCTACTGCATTGTATTGCCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTTTATATCCCTTCTGTCATCACTATTCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTGCTTGTGTTCTGGATTCTCTTTGAGAATGTCATGTCCCTGCACCGAACCAAGGCAACGATTATTGGTCTACTAGAGGCTAGTCGAGTGAACGAATGGGTTGTCACAGAAAAACTTGGTGATGCTTTGAAGGCTAAAGCAGGAGGCAAAGCACCTAAAAAGCCTCGATTCAAGATTGGAGACAGGATTCATTTATTAGAACTTGGGGTCGCATTCTACCTCTTCTTTTGTGGGTGCTATGATGTTATGTTCGGGAAAAACCACTTCTTCATCTTCCTCTTTATCCAATCTCTTGCCTTCTTCATTATGGCATTTGGATATGTTGGCACCATTGTTCCTCAGTTCTAG 1602 0.4501 MDRFSSSTVIPEAFQGAKDDLTTQLALVWNQIKAPLIVPLLRLAVFLCLIMSVMMFVERVYMGVVITLVKLFGRKPEKRYKWEPMKDDIELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQILDDSTDPTIKEMVQLECQRWASKGVNIKYEIRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTIPFLVHNPELALIQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTLKAYRYQQHRWSCGPANLFRKMVLEIINNKKVSLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVLVPEVVVPKWGAVYIPSVITILNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKAKAGGKAPKKPRFKIGDRIHLLELGVAFYLFFCGCYDVMFGKNHFFIFLFIQSLAFFIMAFGYVGTIVPQF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02399 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 373 IPR029044 -
Vimu6g02399 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 12 528 - -
Vimu6g02399 533 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Vimu6g02399 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 313 IPR029044 -
Vimu6g02399 533 CDD CESA_CaSu_A2 97 333 - -
Vimu6g02399 533 Pfam Glycosyl transferase family group 2 191 381 IPR001173 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02399 Vimu-Chr6 20983792 20987812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02399 1 532 Miscellaneous Gene Families AT5G03760 80.113 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02399 K13680 - gmx:100782772 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02399 6 20983792 20987812 Vimu5g01800 5 29833256 29838674 ECH
Vimu6g02399 6 20983792 20987812 Vimu6g02399 6 20983792 20987812 ECH