Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01800 ATGGTTGATTCAGAGCCAAAGTTCTTCATCCCGGACTCAATCCAGGGCGTCAATTTCGACGTCACGGCACAGCTGAGGATGGTCTGGGAGGTCATAAAGGCGCCGCTGATCGTGCCGCTGCTCAACTTGGCGGTGTACATTTGCCTCGCCATGGCCCTCATGCTCTTCATGGAAAGGGTCTACATGGGCATTGTCATCATCCTCGTCAAACTCTTCTGGAAGAAACCCCACCAACGCTACAAGTTCGAACCCCTCCAAGAAGACGAGGAACTCGGCAACACCAACTTCCCCGTCGTCCTTGTTCAGATTCCCATGTTCAACGAAAAAGAGGTGTACAAGGTGTCAATTGGAGCAGCCTGTAATCTCTCATGGCCCGCGGATCGTCTCGTGATTCAAGTGCTCGACGATTCAACTGACCCTGCCATCAAGCAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGCAAAGGGATAAACATAACATACCAAATCAGAGAGACTCGAGGTGGATACAAAGCTGGTGCTCTAAAAGAAGGCCTAAAACGTAGCTATGTGAAACATTGCGAGTACGTGGCAATTTTTGATGCTGATTTTCGTCCAGAACCAGATTTTCTCAGACGTTCCATTCCTTTCTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGTGAATGCTGATGAGTGTTTGTTGACAAGAATGCAAGAAATGTCTCTGGATTACCATTTCACTGTAGAGCAAGAAGTTGGGTCAGCCACTCATGCTTTCTTTGGTTTCAACGGAACTGCTGGTATTTGGAGAATAGCTGCTATTAATGAAGCTGGAGGGTGGAAAGACAGAACAACAGTGGAAGATATGGATCTTGCTGTTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTCGGAGACCTCCAGGCAAAAAGTGAGCTTCCAAGTACTTTGAGAGCCTTTAGATTCCAGCAGCACAGATGGTCTTGTGGTCCTGCAAATTTGTTCCGCAAAATGGTTATGGAGATAGTAAGGAACAAGAAAGTTAGGTTCTGGAAGAAAGTGTACGTTATATACAGCTTCTTTTTTGTTCGAAAAATCATAGCTCACATGGTCACTTTCTTCTTCTACTGTGTTGTGATTCCCCTCACAATCTTGGTTCCTGAGGTTCACGTTCCCATATGGGGAGCTGTTTATATTCCTTCTGTCATAACCATTCTCAATTCAGTAGGAACACCAAGGTCCATTCACCTTCTATTCTATTGGATCCTCTTTGAGAATGTGATGTCATTGCACCGAACAAAGGCAACATTTATAGGTCTCTTAGAATATGGGAGAGCTAATGAATGGGTTGTGACTGAAAAACTTGGTGATTCTGTCAACAGCAATAACAAGAATAAATCAGGAGATGCTGCCAAGAAGAATGTTGCCACCAAGGCACCCAAAAAGACTCGATCCAAATTCGTTGAAAGACTTAACTTACTGGAGCTGGGATTTGCTGCATTCCTCTTTGTATGTGGTTGCTATGATTTTGTGCATGGGAAGCACAACTACTTCATCTACCTCTTCCTTCAGACCATAACATTCTCAATTGTAGGATTTGGCTATGTTGGCACCATTGTGTAA 1629 0.4487 MVDSEPKFFIPDSIQGVNFDVTAQLRMVWEVIKAPLIVPLLNLAVYICLAMALMLFMERVYMGIVIILVKLFWKKPHQRYKFEPLQEDEELGNTNFPVVLVQIPMFNEKEVYKVSIGAACNLSWPADRLVIQVLDDSTDPAIKQMVEMECQRWASKGINITYQIRETRGGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDFLRRSIPFLVGNPDIALVQARWRFVNADECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGIWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKKVRFWKKVYVIYSFFFVRKIIAHMVTFFFYCVVIPLTILVPEVHVPIWGAVYIPSVITILNSVGTPRSIHLLFYWILFENVMSLHRTKATFIGLLEYGRANEWVVTEKLGDSVNSNNKNKSGDAAKKNVATKAPKKTRSKFVERLNLLELGFAAFLFVCGCYDFVHGKHNYFIYLFLQTITFSIVGFGYVGTIV 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01800 542 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 22 540 - -
Vimu5g01800 542 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Vimu5g01800 542 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 377 IPR029044 -
Vimu5g01800 542 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 87 316 IPR029044 -
Vimu5g01800 542 Pfam Glycosyl transferase family group 2 190 396 IPR001173 -
Vimu5g01800 542 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01800 Vimu-Chr5 29833256 29838674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01800 1 542 Miscellaneous Gene Families AT5G22740 81.801 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01800 K13680 - gmx:100791645 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01800 5 29833256 29838674 Vimu5g01800 5 29833256 29838674 ECH
Vimu6g02399 6 20983792 20987812 Vimu5g01800 5 29833256 29838674 ECH