Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02303 ATGCAAACAGTGCGTTTGGTGGTGACAGGAGAAGCGTGGACTGAGAACACGTGTGGTGTAATAGAGACATTTCGATACTTTGATCAGATCCACGACAATTGCTCATCCATGACTCTTGGCTCTGCGGGATCCAGTGTCGTGGTTCCGAGGAACTTCAGATTGCTCGAGGAACTTGAAAAGGGAGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGATATTTACATGCGCTCTTGGACTGGCACCATCATTGGCCCCTATAATACTGTTCACGAAGGAAGAATTTATCAATTGAAGTTGTTTTGTGATAAAGATTACCCAGAAAAGCCTCCAACTGTTCGGTTTCATTCACGGATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAATCAAAGAAATTTGGTCTTCTTGCAAATTGGCAACGAAGGTTTACCATGGAAGATATATTGACCCAACTGAAGAAGGAAATGGCAGCTTCACATAACCGCAAGCTTATCCAGCCTCCTGAAGGGAATGTCCAAATGAGCTTAATCTTTACCTCCGTAGCTTGA 576 0.4306 MQTVRLVVTGEAWTENTCGVIETFRYFDQIHDNCSSMTLGSAGSSVVVPRNFRLLEELEKGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQLKKEMAASHNRKLIQPPEGNVQMSLIFTSVA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02303 191 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 82 169 - -
Vimu6g02303 191 FunFam Ubiquitin-conjugating enzyme E2 variant 1C 40 182 - -
Vimu6g02303 191 SUPERFAMILY UBC-like 47 181 IPR016135 -
Vimu6g02303 191 Pfam Ubiquitin-conjugating enzyme 79 168 IPR000608 -
Vimu6g02303 191 SMART ubc_7 52 188 - -
Vimu6g02303 191 Gene3D Ubiquitin Conjugating Enzyme 35 182 IPR016135 -
Vimu6g02303 191 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 49 191 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02303 Vimu-Chr6 20135802 20139539 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02303 K10704 - gmx:100789495 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02303 6 20135802 20139539 Vimu6g02303 6 20135802 20139539 ECH
Vimu6g02303 6 20135802 20139539 Vimu3g00153 3 1237671 1240394 PCT