Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00153 GAGCCAGTGGGCCGAAACAGAACGGGCCCTTCTGGTCCACAGATAAACAATCAGGGACCAACAGTCATTATTCATTGCGAAAATCTTACATCGTTCTTTCTTTCTACAAAATCCCTCATTTCCTTCTTTATTCCCATTTCCCACCCTTTCATCATTCATCATCGCCTCCACCACGCACCCACCCAGATTCTCCTTCCTCTCCGCGTTCCTCTTCCGTCTCCAAATTTCGATTCTTTCGATCAGATCTGTAACCCCCATCTCGCCAAAACCCTCTGCCACCCATCCATGACGCTTGGCTCGGGAGGATCCAGTGTCGTGGTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAACGAGGAGAAAAAGGTATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATACTGTACATGAAGGAAGAATCTATCAACTGAAGCTGTTTTGTGATAAAGACTACCCCGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAAATGGAGTGGTTGAACCAAAGAAGTTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGACATACTGACCCAGCTGAAGAAGGAAATGGCAGCTCCTCATAACCGGAAGCTTGTCCAGCCCCCAGAAGGTACCTACTTTTAG 726 0.4697 EPVGRNRTGPSGPQINNQGPTVIIHCENLTSFFLSTKSLISFFIPISHPFIIHHRLHHAPTQILLPLRVPLPSPNFDSFDQICNPHLAKTLCHPSMTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHENGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00153 241 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 141 229 - -
Vimu3g00153 241 FunFam Ubiquitin-conjugating enzyme E2 variant 1C 99 241 - -
Vimu3g00153 241 Gene3D Ubiquitin Conjugating Enzyme 96 241 IPR016135 -
Vimu3g00153 241 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 108 241 IPR000608 -
Vimu3g00153 241 SMART ubc_7 111 239 - -
Vimu3g00153 241 SUPERFAMILY UBC-like 106 241 IPR016135 -
Vimu3g00153 241 Pfam Ubiquitin-conjugating enzyme 138 231 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00153 Vimu-Chr3 1237671 1240394 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00153 K10704 - gmx:100816570 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00153 3 1237671 1240394 Vimu3g00153 3 1237671 1240394 ECH
Vimu6g02303 6 20135802 20139539 Vimu3g00153 3 1237671 1240394 PCT