Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02292 ATGGAAGACACCAAATCCAGGTTCAAGAGGATTTGCGTCTTCTGTGGCAGCAGTTCAGGAAAAAAACCTACCTATCAAGAAGCTGCCGTTCAACTTGGCAGGGAGCTGGTGGAAAGAAGAATTGATTTGGTGTATGGAGGTGGCAGCGTGGGGCTGATGGGTCTCGTTTCTCAGGCTGTTCATGATGGTGGGCGCCATGTTCTAGGGGTTATCCCAACAAGTCTTATGCCAAGAGAGATAACAGGTGAACCTATTGGAGAAGTGAGAGCCGTATCTAATATGCACCAAAGGAAAGCTGAGATGGCTCGTCAAGCCGATGCCTTTATTGCCCTCCCAGGAGGATATGGAACCCTTGAAGAATTGCTGGAAGTCATTACATGGGCTCAGCTTGGGATCCACAGCAAACCCGTGGGGCTTTTGAATGTGGATGGATTTTACAATTCCTTGTTGTCTTTCATTGACAAGGCCGTTGATGAAGGGTTTATATCTCCTAAGGCACGAGGCATTATCGTGTCAGCACCCACAGCCAAAGAATTGATGGTAGAACTAGAGGAACATGTCCCTGAGCAAGATGAGTTTGCATCCAAGTTGGTGTGGGAGGAAAGACTAAATTTCGTCACTGAATCAGAAGTGGCCATGTGA 642 0.4751 MEDTKSRFKRICVFCGSSSGKKPTYQEAAVQLGRELVERRIDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPTSLMPREITGEPIGEVRAVSNMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHSKPVGLLNVDGFYNSLLSFIDKAVDEGFISPKARGIIVSAPTAKELMVELEEHVPEQDEFASKLVWEERLNFVTESEVAM 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02292 213 Gene3D - 1 185 - -
Vimu6g02292 213 Pfam Possible lysine decarboxylase 53 181 IPR031100 -
Vimu6g02292 213 NCBIfam Rossman fold protein, TIGR00730 family 9 184 IPR005269 GO:0009691|GO:0016787
Vimu6g02292 213 PANTHER LOG FAMILY PROTEIN YJL055W 4 205 - -
Vimu6g02292 213 FunFam CASP-like protein 1 185 - -
Vimu6g02292 213 SUPERFAMILY MCP/YpsA-like 7 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02292 Vimu-Chr6 20042615 20046317 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02292 K22522 - gmx:100792663 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02292 6 20042615 20046317 Vimu6g02292 6 20042615 20046317 ECH
Vimu6g02292 6 20042615 20046317 Vimu3g00161 3 1338107 1341401 PCT