Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00161 TTGAAAACTTCACATCACACACCACAAATGGAAGAAACCAAATCCAAGTTCAAGAGAATTTGTGTGTACTGTGGAAGCAGTTCTGGTAACAAAGCCAGTTACCAAGAAGCTGCTGTGGAACTTGGCGAAGAAATGGTTAAGAGAAGGATTGATTTGGTCTATGGAGGTGGTAGCGTGGGGTTGATGGGTCTAGTTTCTCAGGCAGTTCATGATGGTGGGCGCCATGTTCTGGGTGTTATCCCAAGAAGTCTCATGCCAATAGAGATAACTGGTGAACCTATTGGTGAAGTGAGAGCAGTATCTGATATGCATCAAAGGAAAGCTGAGATGGCTCGTCAAGCTGATGCATTCATTGCTCTTCCTGGAGGGTATGGAACACTTGAAGAATTGCTTGAAATCATTACATGGGCTCAGCTTGGAATCCACAGCAAACCGGTGGGTCTGTTGAATGTGGATGGATTTTACAATTCGTTGTTGTGTTTCATTGACAAGGCCGTTGATGAAGGCTTTATTTCTCCAAAGGCACGTCGCATTATCGTGTCAGCCCCCACAGCCAAAGACTTGGTTAGGGAGCTAGAGGAACATGTACCTGAACGAGATGAAGTTGTGTCCAAGTTGGTGTGGGAAGAAAGACTAAGTTACGTGCCGGAATCAGAAGTTGCCATGTGA 669 0.4529 MKTSHHTPQMEETKSKFKRICVYCGSSSGNKASYQEAAVELGEEMVKRRIDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPRSLMPIEITGEPIGEVRAVSDMHQRKAEMARQADAFIALPGGYGTLEELLEIITWAQLGIHSKPVGLLNVDGFYNSLLCFIDKAVDEGFISPKARRIIVSAPTAKDLVRELEEHVPERDEVVSKLVWEERLSYVPESEVAM 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00161 222 FunFam CASP-like protein 8 194 - -
Vimu3g00161 222 SUPERFAMILY MCP/YpsA-like 16 195 - -
Vimu3g00161 222 NCBIfam Rossman fold protein, TIGR00730 family 18 194 IPR005269 GO:0009691|GO:0016787
Vimu3g00161 222 Gene3D - 7 194 - -
Vimu3g00161 222 PANTHER LOG FAMILY PROTEIN YJL055W 11 217 - -
Vimu3g00161 222 Pfam Possible lysine decarboxylase 62 191 IPR031100 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00161 Vimu-Chr3 1338107 1341401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00161 K22522 - gmx:100816928 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00161 3 1338107 1341401 Vimu3g00161 3 1338107 1341401 ECH
Vimu6g02292 6 20042615 20046317 Vimu3g00161 3 1338107 1341401 PCT