Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02291 ATGGCTCTTCTTTACATCATTCTCTTATCTCTAACTCTCATCTCTCACACTGCACTCACTTCCTCCACCATCACTCTCCCTCTCTCCCCTCTGCTCACCAAACCCCAATCCTCCGCTCGCTTCCAATCTCTCAGACTCGCCGCTTCAGCTTCTCTAACCCGGGCCCACCACCTCAAACACCGCCAAAATGCTTCCTCAGTCGCCACAGCCCAAGTCTACCCCAAAAGCTACGGTGGCTACTCCATAGATCTCAACTTTGGAACCCCACCCCAAACCTCCCCCTTCGTTCTCGACACAGGAAGTAGTCTCGTCTGGTTCCCCTGCACCACCCGCTACATCTGCTCCCACTGTCTCTTCCCAAACATTGACCCCACCAAAATCCACACTTTCATTCCCAAAAATTCCTCCACCGCCAAACTCCTCGGTTGCAGGAACCCCAAATGCGGTTACCTCTTCGGCTCCGACCTTCAATCTCGCTGCCCCCAATGCCAACCCAATTCTCAAAACTGTTCCGTCACTTGTCCCCCTTACATTATCGAATACGGGTTGGGCTCCACTGCGGGCTTTTTGCTCCTCGACAATCTCAATTTTCCTTCAAAAATCGTTCCCCAGTTTCTCGTCGGTTGCTCCATCCTCTCCATCCGCCAACCCTCCGGCATCGCCGGCTTCGGTCGCGGCCAAGAGTCTCTCCCTTCGCAGATGGCCCTCAAGAGATTCTCTTACTGCTTACTCTCCCACATCTTCGACGACTCCACGGAAAGCAGCGACCTCGTTTTACACATTAGCTCCACCGGCGACACCAAAACCAACGGCCTCAGCTACACGCCGTTTCACCCCAACCCTTCTGCCAGCAACCCCGCCTTCCTGGAATATTACTATCTCAGCCTCCGTAAGGTCATTGTCGGCGGCAAGAAAGTTAAGATTCCGTTTGGCTTTTTGGACCCCGGCTCTGACGGTCACGGCGGCACCATCGTGGACTCTGGATCCACCTTCACTTTCATGGAACGCCCCGTATATGATTTGGTGGCCCAAGAGTTTGTGAAGCAGTTGGGGAACTTTTCCAGGGCGGAGGACGTTGAGGCTCAATCTGGGTTGGGTCCCTGTTTTAATACTTCCGGCGCCAAGACCGTGAATTTCCCTGAGTTTACTTTTCAGTTCAAAGGCGGCGCAAAAATGACGCTGCCGGTTGAAAATTATTTCTCCTTGATCGACGACTCGGAGGTGGTGTGTCTGACCGTGGTCTCCGACGGCGGAGCCGGTCCCGCGAAGATGTCTGGTCCCGCTATCATTTTGGGGAACTATCAACAGCAGAATTTCCACATTGAATATGATTTGGAGAATGAGAGGTTCGGGTTCGGCCCTCAGAGTTGCAAAAAGAAAACTTAG 1386 0.531 MALLYIILLSLTLISHTALTSSTITLPLSPLLTKPQSSARFQSLRLAASASLTRAHHLKHRQNASSVATAQVYPKSYGGYSIDLNFGTPPQTSPFVLDTGSSLVWFPCTTRYICSHCLFPNIDPTKIHTFIPKNSSTAKLLGCRNPKCGYLFGSDLQSRCPQCQPNSQNCSVTCPPYIIEYGLGSTAGFLLLDNLNFPSKIVPQFLVGCSILSIRQPSGIAGFGRGQESLPSQMALKRFSYCLLSHIFDDSTESSDLVLHISSTGDTKTNGLSYTPFHPNPSASNPAFLEYYYLSLRKVIVGGKKVKIPFGFLDPGSDGHGGTIVDSGSTFTFMERPVYDLVAQEFVKQLGNFSRAEDVEAQSGLGPCFNTSGAKTVNFPEFTFQFKGGAKMTLPVENYFSLIDDSEVVCLTVVSDGGAGPAKMSGPAIILGNYQQQNFHIEYDLENERFGFGPQSCKKKT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02291 461 Gene3D Acid Proteases 55 255 IPR021109 -
Vimu6g02291 461 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Vimu6g02291 461 PRINTS Pepsin (A1) aspartic protease family signature 323 334 IPR001461 GO:0004190|GO:0006508
Vimu6g02291 461 PRINTS Pepsin (A1) aspartic protease family signature 429 444 IPR001461 GO:0004190|GO:0006508
Vimu6g02291 461 Gene3D Acid Proteases 259 461 IPR021109 -
Vimu6g02291 461 Pfam Xylanase inhibitor C-terminal 292 453 IPR032799 -
Vimu6g02291 461 Pfam Xylanase inhibitor N-terminal 80 257 IPR032861 -
Vimu6g02291 461 PANTHER OS07G0603500 PROTEIN-RELATED 28 458 - -
Vimu6g02291 461 FunFam Aspartyl protease family protein 263 460 - -
Vimu6g02291 461 ProSiteProfiles Peptidase family A1 domain profile. 80 453 IPR033121 -
Vimu6g02291 461 SUPERFAMILY Acid proteases 75 457 IPR021109 -
Vimu6g02291 461 FunFam Aspartic proteinase nepenthesin-2 55 257 - -
Vimu6g02291 461 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 95 106 IPR001969 GO:0004190|GO:0006508
Vimu6g02291 461 CDD pepsin_A_like_plant 79 457 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02291 Vimu-Chr6 20031290 20032675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02291 39 459 Miscellaneous Gene Families AT1G77480 24.401 9.92e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02291 - - gmx:100805927 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02291 6 20031290 20032675 Vimu6g02291 6 20031290 20032675 ECH
Vimu6g02291 6 20031290 20032675 Vimu3g00163 3 1378683 1380059 PCT