Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00163 ATGCCTCCTCCTCCTTCTCTTGTTTCCTCTATACTCTGTTTTCTCTCTGTTTTCATCTTCACTTCATCATCCACACCCAACACCATCACCCTCCCTCTCTCCCACGTATTCACCAACCACCCTTCTTCGCAGCCATTCCACAACCTCAAACTCGCTGTTTCAACTTCCATCACAAGAGCCCGCCACCTCAAAAATCACCAACCCAACCCGCTCAAAACCCAAATCCACCCCAAAAGCTACGGAGGATACTCCATCGACCTCAATTTCGGAACTCCGCCACAAACCTTCTCCTTTATTCTCGACACCGGAAGCACCCTCGTCTGGCTCCCATGCTCCTCCCACTACCTCTGCTCAAATTGCAACTCCTTCCACAATGCACCCAAATCTTTCATCCCCAAGAACTCTTCTTCCTCCAAGTTAGTGGGCTGCACCAACCCCAAATGCGCGTGGCTCTTCGGCGCCAACGTTGAATCGCGCTGTTGCAAACAAAACACTGCAACCGCCAACTGTTCACTCACATGCCCTGCTTACACTGTCCAATACGGGCTGGGCTCAACCGCGGGCTTTCTCCTCTCAGAAAATCTCAACTTTCCCGCGAAGATCCTCCCCGATTTTCTCGTCGGCTGCTCCATCGTCTCCGTCTACCAGCCAGCCGGAATCGCGGGCTTCGGCCGCGGTCCGGAGTCCCTTCCGTCGCAGATGAACCTCACTGGATTCTCTTACTGCTTACTCTCACACCAGTTCAACGAATCGCCGGAAACCAGCGACCTCGTCTTGCACACTTCCTCCTCAGACAAGAAAAGAACAAACGGCGTCAGCTACACGCCTTTCCGGAAAAACCCGTCGAGCAAAAACCCCGCGTTCGGTGCGTACTATTACCTTACTCTCAGGAGAATCGTCGTTGGGGAGAACCGCGTGCGGGTTCCGAAGAGGCTTCTAGAGCCTGACGTTGACGGTAACGGTGGGACTATCGTGGACTCGGGGTCAACCTTCACGTTCATGGAAAGGCCAATATTTGATTTGGTGGCACAAGAGTTTGCGAAGCAGGTGAACTACACGCGCGCGAGGGAGGTGGAGAAACAATCCGGGCTGAGTCCGTGTTTTGTGGTGTCTGGAACGGCGTCGTTTCCGGAGCTCCGGTTCGAGTTCAGGGGCGGCGCGAAGATGAGGCAGCCGCTGACGAATTATTTTTCGTTGGTCGGGAAATCCGACGTGGTGTGTTTGACTATTGTATCTGATGACGTGGCTGGTACCGGCGTGGCGGGTGGGCCCGCTGTGATATTGGGAAACTATCAGCAGCAGAATTTCTACGTTGAGTATGACTTGAGAAACGAGAGGTTCGGATTTCGGAGTCAGAGTTGCAAAACGCGCGTTTAA 1377 0.5352 MPPPPSLVSSILCFLSVFIFTSSSTPNTITLPLSHVFTNHPSSQPFHNLKLAVSTSITRARHLKNHQPNPLKTQIHPKSYGGYSIDLNFGTPPQTFSFILDTGSTLVWLPCSSHYLCSNCNSFHNAPKSFIPKNSSSSKLVGCTNPKCAWLFGANVESRCCKQNTATANCSLTCPAYTVQYGLGSTAGFLLSENLNFPAKILPDFLVGCSIVSVYQPAGIAGFGRGPESLPSQMNLTGFSYCLLSHQFNESPETSDLVLHTSSSDKKRTNGVSYTPFRKNPSSKNPAFGAYYYLTLRRIVVGENRVRVPKRLLEPDVDGNGGTIVDSGSTFTFMERPIFDLVAQEFAKQVNYTRAREVEKQSGLSPCFVVSGTASFPELRFEFRGGAKMRQPLTNYFSLVGKSDVVCLTIVSDDVAGTGVAGGPAVILGNYQQQNFYVEYDLRNERFGFRSQSCKTRV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00163 458 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 98 109 IPR001969 GO:0004190|GO:0006508
Vimu3g00163 458 CDD pepsin_A_like_plant 82 454 IPR034161 -
Vimu3g00163 458 Pfam Xylanase inhibitor N-terminal 83 251 IPR032861 -
Vimu3g00163 458 Gene3D Acid Proteases 259 458 IPR021109 -
Vimu3g00163 458 SUPERFAMILY Acid proteases 79 454 IPR021109 -
Vimu3g00163 458 FunFam Aspartyl protease family protein 263 457 - -
Vimu3g00163 458 PANTHER OS07G0603500 PROTEIN-RELATED 37 454 - -
Vimu3g00163 458 Gene3D Acid Proteases 59 252 IPR021109 -
Vimu3g00163 458 PRINTS Pepsin (A1) aspartic protease family signature 323 334 IPR001461 GO:0004190|GO:0006508
Vimu3g00163 458 PRINTS Pepsin (A1) aspartic protease family signature 426 441 IPR001461 GO:0004190|GO:0006508
Vimu3g00163 458 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Vimu3g00163 458 Pfam Xylanase inhibitor C-terminal 292 450 IPR032799 -
Vimu3g00163 458 ProSiteProfiles Peptidase family A1 domain profile. 83 450 IPR033121 -
Vimu3g00163 458 FunFam Aspartic proteinase nepenthesin-2 60 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00163 Vimu-Chr3 1378683 1380059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00163 70 454 Miscellaneous Gene Families AT1G44130 23.114 1.26e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00163 - - gmx:100808552 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00163 3 1378683 1380059 Vimu3g00163 3 1378683 1380059 ECH
Vimu6g02291 6 20031290 20032675 Vimu3g00163 3 1378683 1380059 PCT