Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02229 ATGGAATCTGATAACGGGCTTGCTGTGGAGGAAGAGAAACGTGTCATCGGAGTAACAACCAAGGTGGAGAATATAAAGAAAGAAGATGAAAAGGACTGTAACGGTGCAGAAATTCAGACCAAGAAGGAAGTATCTAAACCCATTTCTGCTGCAAATAAAAATTCAAAAGGTGCCACTAAGGAAACTGGTGGCAGAGCAAGTGTTGCTTCCAAGAGCAACAAATATGCCAAAGATCATTTGAAGGGTCTGAGTTCAATAGCTCAAAAACAAAGACCTTCACTTTCCCAAAGCATTTCTTTCCCAGCCAGATCATCTCGGGAAGATGCTATGCAGAAAAGCATTGATGGGTATATTCTGAAGACAAACGTTAAAGGTTATGGGATTAGAGCTGAAGCCCCCGTTAGTCATTTAAACAACTCCACAAACTCACTGGCCAAAACTCACGCTGGCATGCCTGCTTTGAAACGCTCTGCGTTTGGAAGGACTACTACAGTTACTCCAGCCACCAAGAGCCAAATTTCTGAGACATCTTTACTTGTTGATCATGTGTCAAACAGGGCAAAGTCTGGAAAACCAAATAAAGATGAAGATGATTGCCATTCCGCAACGTCAAGTGCTACTCCTCGTCTGAGAAGCAGCGGAGTTGGATTTTCCTTTCGATTGGAAGAAAGAGCTGAAAAGCGAAAGGAGTTTTTCTCAAAGTTGGAGGAAAAAACTCTAGCCAAGGAAGCAGAGAAAACTAACCTACAAGCAAAATCAAAGGAAAACCAAGAGGCAGAGATCAAACTATTGAGGAAGAGCCTGACATTCAAAGCCACTCCAATGCCAAATTTCTACAAGGAACCACCTCCAAAAGTTGAGCTTAAGAAGATACCAACAACACGCCCAAAATCCCCAAAGCTTGGAAGGCACAAAGAACCGACAATGAACAACAATTCAGTAGATGATAAGTATTGCTCAAGTCCGCGTGGGAAACAACAGCAGAATGATTCAAACAAGGGTAAGGGTCATAAGGATGTGATTTCAAAGAAACAAATCCCAAAAAACCACTCCAAGCTGAAATCTGAGGAAAATGTAACCATAGAAAACAAAGAATTCCAAGTTCCAGATAACAACAATTCTGAATGCAAAAATGACATGGAATTACAATGTGAACCAGGTCATGCATCAAATAGTGCGCTGCTTCTAAATTCGACTACGACGGAGCTTGTGTCGTATGAGGTTATTGTTGGAGTGTAG 1239 0.4165 MESDNGLAVEEEKRVIGVTTKVENIKKEDEKDCNGAEIQTKKEVSKPISAANKNSKGATKETGGRASVASKSNKYAKDHLKGLSSIAQKQRPSLSQSISFPARSSREDAMQKSIDGYILKTNVKGYGIRAEAPVSHLNNSTNSLAKTHAGMPALKRSAFGRTTTVTPATKSQISETSLLVDHVSNRAKSGKPNKDEDDCHSATSSATPRLRSSGVGFSFRLEERAEKRKEFFSKLEEKTLAKEAEKTNLQAKSKENQEAEIKLLRKSLTFKATPMPNFYKEPPPKVELKKIPTTRPKSPKLGRHKEPTMNNNSVDDKYCSSPRGKQQQNDSNKGKGHKDVISKKQIPKNHSKLKSEENVTIENKEFQVPDNNNSECKNDMELQCEPGHASNSALLLNSTTTELVSYEVIVGV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02229 412 Pfam Targeting protein for Xklp2 (TPX2) domain 217 286 IPR027329 -
Vimu6g02229 412 Coils Coil 242 262 - -
Vimu6g02229 412 MobiDBLite consensus disorder prediction 283 304 - -
Vimu6g02229 412 PANTHER PROTEIN WVD2-LIKE 4 44 379 IPR044833 GO:0008017
Vimu6g02229 412 MobiDBLite consensus disorder prediction 45 69 - -
Vimu6g02229 412 MobiDBLite consensus disorder prediction 274 356 - -
Vimu6g02229 412 MobiDBLite consensus disorder prediction 330 356 - -
Vimu6g02229 412 MobiDBLite consensus disorder prediction 86 106 - -
Vimu6g02229 412 MobiDBLite consensus disorder prediction 185 211 - -
Vimu6g02229 412 MobiDBLite consensus disorder prediction 305 329 - -
Vimu6g02229 412 MobiDBLite consensus disorder prediction 187 202 - -
Vimu6g02229 412 MobiDBLite consensus disorder prediction 31 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02229 Vimu-Chr6 19518499 19520665 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02229 - - vun:114179125 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02229 6 19518499 19520665 Vimu3g00226 3 1968074 1970391 PCT