Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02211 ATGATGCCTAAACCCATGAACGTTTTGACAACAAAGCCCTCACCTTTGAGTACCATGGTGGTGGTGCTGATACTATGCATTCTGGGTTTCTATGCTCTGCATTTCCCTCACTCTTCTACACCTTCCTCCTCCTCTCAAAACCTCTCTCAGGTGGAAAAACTTTTTCTCTCCACTTCCTCAAACTCCACCATTTCTTCCTACCTACGCGCCCTCACCCTGCACCCTCACCTCGCCGGAACAAAACCCGGCTCCGATGTCGCCAGCTACGTCCTCAACCACTTCACTTCATTGGGACTCAAGACCCACACGGCGACCTACACCACGCTCCTCTCTTACCCGGTTCACTCCTCCCTCTCAGCGCATTTTAGCGAAGGCCCCTCGGTGAGCCTCCGCCTCACGGAGCCAGCAGCCGCGGGCGTGGTTCCGGCCTACCATGCGTATTCACCGTCGGGCGCGGTGCACGCGCGTGCGGTGTTTGCGAACTACGGGAGGGAGAGGGACTACCGCGCGTTGGGCGCGATGGGAGTGAACGTGAGCGGGTGCGTGGTGATGGTACGGAAGGGCGGGGAGATGGGGCGCGGGGCAGTAGTGGAGAGAGCAGAGGCGCACGGGGCGGCGGCGGTGTTGATTTACGGCGAGGGTGACACGTGGCGAAAGGGGTTTGAGAGGGGGCACGTGATGAGGGGAGGAATAGGGGACCCACTTACTCCGGGTTGGGCTGGGGTTGAGGGTGGCGAGACACTGGGATTGGAAGATAGTGAGGTTTTGAAAAGGTTCCCCAAAATTCCATCTATGCCTTTATCAGCTGAGGTGGCTGACTCTATTTTGTCCTCTCTTGGGGGTTCTCCTGTGCCCCTTGAATGGAGGGTCACCCTAAGGTCTAAGGTCAGGCATGTTGGTCCGGGCCCCACCATCCTCAATTTCACTTACCAGGGTGAAAAGAAGGTGGCCAACATTCAAAATGTTTTTGCTGTCATAAAGGGGTCAGAAGAACCTGATCGATGTGTTCTGCTTGGGAACCACAGAGATGCATGGACCTATGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCACTGCTTGACGTTGCTCGTCGGTTTTCTGTTCTATTGGGCTTGGGGTGGAAGCCAAGGAGGACAATAATTCTCTGCAGTTGGGATGCAGAGGAATTTGGGATGATAGGATCTACTGAATGGGTTGAACAAAACCTTATTAATCTGGGTTTCAAAGCTGTAGCATACCTTAATGTGGACTGTGCTGTTCAGGGCCCTGGTTTTTTTGTTGGTTCAACTCCTCAGCTAGACAGTCTTATTCTTGAGGTCACAAAAAAGGTCAAGGATCCTGATTCTGAGGGTGTATCACTATATGAGAATTGGGCCGCTGCTTCTGCTGAAAACAATAAGATTCAGAGGCTCAGTGGAGTTGATTCTGATTTTGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAGATTTTCCTGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGCTGATCCATTCTTCCACCGCCATGTTGCTGTTACGGGAGTTTGGGGGCTTCTAGCCCTTCACTTAGCTGGCGATCCCATTCTTCCTTTCGATTACGTTTCATATGCAAATGAGTTACAGCTGTACAAAAACATGTTGAGCAACTTGATAGATCAGAAAATTTCCCTTCATCCATTAACTCTTTCGATTGAAGAATTTGCTTCCGCTGCCAAAGAAGCTGATGATGAATCAAAGAAACTTAGATTGCAAGAAACAGAAGGCTCTGTTGTGGATATCAAAAAACGAGCATTGAATGATAGACTAATGCTTGTTGAAAGAGGATTCTTGGATGCAGATGGACTTCAAGGAAGGCAGTGGTTCAAGCATCTCGTGTATGGGCCGTCAAGCAACAATGAAAGACTCAATTTCTTCCCTGGGATTTCTGATTCTATTACTGGTTCTACTGGTGTAACTGACACAGAAAGGCTTGCATCAATTCAACATGAGATCTGGAGGGTTGCCAGAGCCATTCGTAGAGCTGCTTCTGCACTCACAGGAGAATTCGTTTAA 2091 0.5007 MMPKPMNVLTTKPSPLSTMVVVLILCILGFYALHFPHSSTPSSSSQNLSQVEKLFLSTSSNSTISSYLRALTLHPHLAGTKPGSDVASYVLNHFTSLGLKTHTATYTTLLSYPVHSSLSAHFSEGPSVSLRLTEPAAAGVVPAYHAYSPSGAVHARAVFANYGRERDYRALGAMGVNVSGCVVMVRKGGEMGRGAVVERAEAHGAAAVLIYGEGDTWRKGFERGHVMRGGIGDPLTPGWAGVEGGETLGLEDSEVLKRFPKIPSMPLSAEVADSILSSLGGSPVPLEWRVTLRSKVRHVGPGPTILNFTYQGEKKVANIQNVFAVIKGSEEPDRCVLLGNHRDAWTYGAVDPSSGTAALLDVARRFSVLLGLGWKPRRTIILCSWDAEEFGMIGSTEWVEQNLINLGFKAVAYLNVDCAVQGPGFFVGSTPQLDSLILEVTKKVKDPDSEGVSLYENWAAASAENNKIQRLSGVDSDFAPFVQHAGVPSIDMYYGRDFPVYHTAFDSYNWMAEYADPFFHRHVAVTGVWGLLALHLAGDPILPFDYVSYANELQLYKNMLSNLIDQKISLHPLTLSIEEFASAAKEADDESKKLRLQETEGSVVDIKKRALNDRLMLVERGFLDADGLQGRQWFKHLVYGPSSNNERLNFFPGISDSITGSTGVTDTERLASIQHEIWRVARAIRRAASALTGEFV 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02211 696 Gene3D - 546 696 IPR036757 -
Vimu6g02211 696 Gene3D Zn peptidases 62 543 - -
Vimu6g02211 696 FunFam N-acetylated-alpha-linked acidic dipeptidase 2 544 694 - -
Vimu6g02211 696 Coils Coil 577 597 - -
Vimu6g02211 696 Pfam Transferrin receptor-like dimerisation domain 568 691 IPR007365 -
Vimu6g02211 696 SUPERFAMILY PA domain 109 323 IPR046450 -
Vimu6g02211 696 Gene3D - 116 312 - -
Vimu6g02211 696 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 18 693 IPR039373 -
Vimu6g02211 696 FunFam Os01g0740650 protein 312 543 - -
Vimu6g02211 696 SUPERFAMILY Transferrin receptor-like dimerisation domain 543 693 IPR036757 -
Vimu6g02211 696 Pfam PA domain 155 215 IPR003137 -
Vimu6g02211 696 Pfam Peptidase family M28 321 509 IPR007484 -
Vimu6g02211 696 CDD M28_PSMA_like 279 544 - -
Vimu6g02211 696 SUPERFAMILY Zn-dependent exopeptidases 60 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02211 Vimu-Chr6 19389868 19394452 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02211 K01301 - gmx:100798131 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02211 6 19389868 19394452 Vimu6g02211 6 19389868 19394452 ECH
Vimu6g02211 6 19389868 19394452 Vimu3g00250 3 2216753 2232363 PCT