Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00250 ATGCTTCAGTTTCGGTTAAAACTCGTAAGGGCATTCGCAGCGAAGCCGTCACCGTTGGTGGCTTTCGTCACGGTAATCGTCATTGGAGTGGTGGGATTTTATTCCCTGCATTTCCCTTTCCGTTCCGCCACTTCCCTCGACGCATCGCACTTCGGCCACGTGTTCCTCTCGTCCTCCTCCAACGCCACGATCTCCAACTACCTGCGCGCGCTCACCATGCACCCTCACCTCGCAGGAACAAAACCCGCCTCCCTAACCGCGCGCTACGTGCTCAACCACTTCACCGCCCTCGGGCTCCGAACCAGCACCGCTAAGCACCGCGTGCTATTGTCCTACCCGCTGCGCTCCTCTCTCTCGGCGCATTTTGGTGACGGTTCGAGTTTGGAGTTTCAGTTGGGGGAGGGAGAGGGGAACGGGGAGGTGGTGGCGCCGTACCACGCGTACTCGCCGTCGGGCTCGGCGTGGGCTGCGGCGGTGTTCGTGAACTACGGGCGGGAGGAGGACTTCCGGTTGCTGGCGGCGGCGGGGGTGAGGGTGGCGGGGTCCGTTGCGGTGGCGAGGACCGGCGGGGGACTGGGGCGTGGGGCGGTGGTGGAGGCGGCAGAGAGGCATGGTGCGGCGGCAGTGGTGGTGTTCAAGGAGGGGGACACGTGGCCCCGAGGTTTTGAGAGGGGACACGTGATGAGAGGGGGGATTGGGGACCCGCTGAGTCCTGGGTGGGGTGGGGTGGTTGGCGGCGAGAGTTTGGGTTTGGATGATAGTGAGGTTTTGAGAAGGTTTCCTAAAATTCCATCCATGCCTTTGTCTTCTGAGGCTGCTGAGAGGATCTTGGCCTCGCTTGGTGGAGCTCCTCTGCCCTTGGATTGGAGGGGTACTCTAAAGTCCTCCAAGGTTACGAATGTTGGTCCTGGCCCCACCATCCTCAATTTCACTTATCAGGGAGAAATGAAAATGGCTACCATTGAAAACGTTTTTGCCATTATCAAAGGACGGGAAGAATCTGATCGCCATGTTCTGCTTGGGAACCATAGAGATGCATGGACATATGGTGCTGTTGACCCCAACAGTGGGACAGCTGCCCTACTTGACATTGCTCGTAGATATGCTATTCTATTGCGTTTGGGGTGGACTCCACGGAGGACTATCATTCTATGCAGTTGGGATGCAGAGGAATTTGGAATGATAGGATCCACTGAGTGGATTGAACAAAACCTTGTTAATCTTCGTTCCAAAGCTGTAGCATACCTTAATGTAGACTGTGCTGTTCAAGGGTCTGGCTTTTTTGCTGGGTCAACTCCTCAGCTAGATGATCTCCTTCTCGATACCATCAAAAAGGTCAAGGATCCTGACTCTGATGAGGGTACAACGATATATCAAAATTGGGCAGCTGGTGGTGGAAAATCTAATATTCAAAGGCTGAGTAGAGTTGATTCTGATTTTGCTCCATTTGTGCAACATGCAGGGGTTCCATCTATTGATATGTATTATGGAAAAGATTATCCTGTTTATCACACTGCTTTCGACTCCTACAACTGGATGACAGAGTTTGGAGATCCTTTCTTTCTGCGCCATGTAGCTGTTACTGGAATATGGGGGCTTCTAGCCCTTCGTCTTGCTGATGATTCCATTATACCTTTCAATTATGTGTCTTATGCGGATCAGTTACAGGTGTACAATGACATATTGAGCAACCTGTTAGACAAGAAAATTTCTCTACATCCACTAACTGCGTCGATTCAAGAATTTGCTTCTGCTGCCAAGGAAGCTAATGAGGAATCAAAGAAACTGAGACTGCAAGAAAACTCAGATCATTTTGTGGATATGAAGATACGAGCATTGAATGATAGACTAATGCTTACGGAAAAAGGTTTCTTGGATGTTGACGGGCTTCGAGGAAGACAATGTGAAAAAGAAAGGCTGGCAGCAATCCAGCATGAGCTTTGGAGGGTGGCCAGGGCTATTCAAAGAGCTACTTCAGCACTAAGAGGAGATTTGGCCTAA 2001 0.5157 MLQFRLKLVRAFAAKPSPLVAFVTVIVIGVVGFYSLHFPFRSATSLDASHFGHVFLSSSSNATISNYLRALTMHPHLAGTKPASLTARYVLNHFTALGLRTSTAKHRVLLSYPLRSSLSAHFGDGSSLEFQLGEGEGNGEVVAPYHAYSPSGSAWAAAVFVNYGREEDFRLLAAAGVRVAGSVAVARTGGGLGRGAVVEAAERHGAAAVVVFKEGDTWPRGFERGHVMRGGIGDPLSPGWGGVVGGESLGLDDSEVLRRFPKIPSMPLSSEAAERILASLGGAPLPLDWRGTLKSSKVTNVGPGPTILNFTYQGEMKMATIENVFAIIKGREESDRHVLLGNHRDAWTYGAVDPNSGTAALLDIARRYAILLRLGWTPRRTIILCSWDAEEFGMIGSTEWIEQNLVNLRSKAVAYLNVDCAVQGSGFFAGSTPQLDDLLLDTIKKVKDPDSDEGTTIYQNWAAGGGKSNIQRLSRVDSDFAPFVQHAGVPSIDMYYGKDYPVYHTAFDSYNWMTEFGDPFFLRHVAVTGIWGLLALRLADDSIIPFNYVSYADQLQVYNDILSNLLDKKISLHPLTASIQEFASAAKEANEESKKLRLQENSDHFVDMKIRALNDRLMLTEKGFLDVDGLRGRQCEKERLAAIQHELWRVARAIQRATSALRGDLA 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00250 666 Gene3D Zn peptidases 62 545 - -
Vimu3g00250 666 SUPERFAMILY Transferrin receptor-like dimerisation domain 545 663 IPR036757 -
Vimu3g00250 666 SUPERFAMILY PA domain 108 325 IPR046450 -
Vimu3g00250 666 CDD M28_PSMA_like 319 546 - -
Vimu3g00250 666 FunFam Os01g0740650 protein 314 545 - -
Vimu3g00250 666 Pfam PA domain 139 223 IPR003137 -
Vimu3g00250 666 Gene3D - 549 638 IPR036757 -
Vimu3g00250 666 Pfam Peptidase family M28 323 511 IPR007484 -
Vimu3g00250 666 Pfam Transferrin receptor-like dimerisation domain 570 635 IPR007365 -
Vimu3g00250 666 Gene3D - 116 314 - -
Vimu3g00250 666 SUPERFAMILY Zn-dependent exopeptidases 60 542 - -
Vimu3g00250 666 Coils Coil 579 599 - -
Vimu3g00250 666 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 23 663 IPR039373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00250 Vimu-Chr3 2216753 2232363 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00250 K01301 - gmx:100817485 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00250 3 2216753 2232363 Vimu3g00250 3 2216753 2232363 ECH
Vimu6g02211 6 19389868 19394452 Vimu3g00250 3 2216753 2232363 PCT