Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02205 ATGGACATGCCTACCATTGATGTGGACCTTGGGCCGGAGAAGTTTGAAGAGGAAAAACAAGGAGGTCCTTTGTTTCATTGTGATCTTTGTGATACAGAAGTAGTTCACAAGTTGGCACAAATGTTCCTTCCAGGTCTAGCTAGTGCTTGTGTTGATAACACATCAGGAGATCTCTTTAAGACGGCTGGTTCAGTAGCTGTTGATATGAGGAAGGAGATGATAGAGTATCTTACCCAAAGAAGTGAATCATTTGTTGCTGAGTCTGTTATATTAGAAGGTGGTCCAGACGGTGAAGTATCAGACCATCCTTATGATATTATTTCTAATTTAGTTGATGACTTTGCAAGTTCGAAGAGAAATTTGTTTAGTCGGGTTTCTGGATGGCTACTAAGTGAAAAGAGAGAAGATAATATAGAAGATTTTGTTCAAGAGATGGAAGTAAATGGGTTTTGGACACTTGAGAGGAGGGAAAAAATTGCAGAAACTTTGTTAAAAAATGTTGACTTTGAGAACTCATATCATTGCAACATGAGTTTTAATGACATAGAAGATCTTGCCAATCATAAAGATAATTGCAACTTTAGATCTATAATATGTGAAAATGAGGGTTGCAATTCTAGATTTTGCGCATCTCATCTAAATGATCATGATTCAACTTGTCCTTTCAAGATAATTTCGTGTGAACAGAAGTGTCCTGCTAACATTATGAGACGTGAGATGGACAGACATTGTATAACTGTCTGTCCAATGAAGCTTGTAAATTGTCCTTTTTATGCTATTGGTTGTCGATCAGCCGTTGCACAATGTATGATTGAAAAACATCGTTCAGATGATATCAACTCTCACTTATGGCATTTTCTTAAAGGAATTTACAAAGAAGCATCTGGAGATGATCTCACTCGACGAGTGGAACAAATTATTCAGGCATCATTAAACAACCGTTTAACAGAGGCTCGAGATGTTAGATCTTTAAGCTTCATTGTCAAGGATATTGAAGCTAAGCTAGAACCTTTCAAAGTAACGATTGTGGATAAAAGTAATGTAAAGACTGACGCCAATAATGGTGAAGAGGAAGGTGGCAAAAATAATATGAACAATGCTGAAAGAAGCATTAATGCTTCAAATATGACCATTTCACCAGATAAAGTTGAAGCGAGTGATACACTGAATGCATTACAAAATGAAGATAATAAGCCTAGTTATGTTAAAAATGAAGGTCACAAAGAAAGGACACAAACTTCAAATATGACAAATGTATCTGATACTACTAAAACTGACCTCTTGAATGACAATAACCAAGATGTTGCAACTACAGAATTAACAACTAAAGCAGATGATGAAGAGAGCACTCAAACACTCAACAAAAATATATCCAGTCAGGAAGTTGGTGAAAGAAACAAGGATGATACAGAGAATGATACTAAAAGCAAATCTATTGAAGATAATGAGCAAATATTAGATGAAGACCATAAATTGAAAGATAAAGATGACAAGAAAAACATATATAATTCAAAAATGGAAGTCAAGGACGATGCAGAGAATAATGTCAAGAATAAAGATACTGAAGACAACTAA 1575 0.3524 MDMPTIDVDLGPEKFEEEKQGGPLFHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKTAGSVAVDMRKEMIEYLTQRSESFVAESVILEGGPDGEVSDHPYDIISNLVDDFASSKRNLFSRVSGWLLSEKREDNIEDFVQEMEVNGFWTLERREKIAETLLKNVDFENSYHCNMSFNDIEDLANHKDNCNFRSIICENEGCNSRFCASHLNDHDSTCPFKIISCEQKCPANIMRREMDRHCITVCPMKLVNCPFYAIGCRSAVAQCMIEKHRSDDINSHLWHFLKGIYKEASGDDLTRRVEQIIQASLNNRLTEARDVRSLSFIVKDIEAKLEPFKVTIVDKSNVKTDANNGEEEGGKNNMNNAERSINASNMTISPDKVEASDTLNALQNEDNKPSYVKNEGHKERTQTSNMTNVSDTTKTDLLNDNNQDVATTELTTKADDEESTQTLNKNISSQEVGERNKDDTENDTKSKSIEDNEQILDEDHKLKDKDDKKNIYNSKMEVKDDAENNVKNKDTEDN 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02205 524 SUPERFAMILY TRAF domain-like 199 271 - -
Vimu6g02205 524 MobiDBLite consensus disorder prediction 461 524 - -
Vimu6g02205 524 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 24 510 - -
Vimu6g02205 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 280 IPR013083 -
Vimu6g02205 524 ProSiteProfiles Zinc finger TRAF-type profile. 211 263 IPR001293 GO:0008270
Vimu6g02205 524 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
Vimu6g02205 524 MobiDBLite consensus disorder prediction 411 439 - -
Vimu6g02205 524 MobiDBLite consensus disorder prediction 392 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02205 Vimu-Chr6 19353820 19357090 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02205 - - gmx:100799182 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02205 6 19353820 19357090 Vimu6g02205 6 19353820 19357090 ECH
Vimu6g02205 6 19353820 19357090 Vimu3g00264 3 2429051 2431226 PCT