Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00264 ATGGAGTTGCCTTCAAATAACTTGGATGTTGGGCCTAGGCAGATTGAACATGAGAAAGACGAAGGTCCCTTGTTGCATTGTGATTTTTGTGACATTGAAGTAGTTCACAAGCTGGCTCAAATGTTCATGCCAGCACTAGGCTGTGCCTGTGTTGATAACACAACAGGAGACCCCTTCAAGACCCCTGGTTTTGTGGCTGTTGATTTGAGAAAGGAGATGATAGAATTTGTCACCCAAAAGAGTGAATTGTTTGTTGCTGAGTCTATTATCTCTGAGGACGTTCCTGATGGTGAAGCTTTGGAACATCCTTTTGATATCATTTGTTTTTTTGTTGACGAGTTTGTTAATTCAAAGAGAAATTTGTTGAGCCAGTTTTCAGGGTGGTTGCTAAGTGATAAGAGAGAGGACAAAATAGATGATTTTGTTCAGGAGATGGAAAAAAATGGTTTTTGGCCACTGGATAGAAGAGAAACACTTGCCAAAGATTTGCTCAAGAACGTTGACTTCAAAAGCTCATTTCATTGTGGTATGAGTTTTAAATCTGGAGAAGATCTTGCCAACCATGTTGATGCTTGCAACTTCAGGTCTGTGGTATGCCAAAATGACGGGTGCAATGATAGATTTAGTGCTGGTCAATTGAAAGAGCATGATTCAACTTGTGATTTCAAGATAGTTCCATGTGAACAAAAGTGCACAGCTAACATCTTGCGACGTGACATGGATAGACACTGCATAACTGTTTGTCCACTGAAGCTTGTGGATTGCCCTTTCTCTGCCGTAGGTTGTAGATCTACAATTGGGCAAAGTATGATTAGAAAACATTGTTCGGATGATGTTGAGTCTCACTTACTACTAATACTTAAAGGCATCCATCAACAAGCATCAGACAAAGATCTTCAAAGACGTGTGGAGCAAATTGTACAGACATCATCGAGAAGCAAATTAGCAGAGGCTAAGGATGTGAGATCTTTTAAAAGTATTGTGAAGGACCTTGAAGTTAAGCTAGGGTCTCTGGAAGTGAGTGCCAAGGAGAAAACTTGTGCAGAAGTTTCCAAAAATGAAGACAGTGAAAATAGAACTGGCGAAGCAAAGGGTGTCAATAAAGAGGATAGTTAA 1116 0.4014 MELPSNNLDVGPRQIEHEKDEGPLLHCDFCDIEVVHKLAQMFMPALGCACVDNTTGDPFKTPGFVAVDLRKEMIEFVTQKSELFVAESIISEDVPDGEALEHPFDIICFFVDEFVNSKRNLLSQFSGWLLSDKREDKIDDFVQEMEKNGFWPLDRRETLAKDLLKNVDFKSSFHCGMSFKSGEDLANHVDACNFRSVVCQNDGCNDRFSAGQLKEHDSTCDFKIVPCEQKCTANILRRDMDRHCITVCPLKLVDCPFSAVGCRSTIGQSMIRKHCSDDVESHLLLILKGIHQQASDKDLQRRVEQIVQTSSRSKLAEAKDVRSFKSIVKDLEVKLGSLEVSAKEKTCAEVSKNEDSENRTGEAKGVNKEDS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00264 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 218 IPR013083 -
Vimu3g00264 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 281 IPR013083 -
Vimu3g00264 371 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 24 343 - -
Vimu3g00264 371 SUPERFAMILY TRAF domain-like 197 267 - -
Vimu3g00264 371 MobiDBLite consensus disorder prediction 347 371 - -
Vimu3g00264 371 ProSiteProfiles Zinc finger TRAF-type profile. 216 263 IPR001293 GO:0008270
Vimu3g00264 371 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00264 Vimu-Chr3 2429051 2431226 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00264 - - vra:106769987 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00264 3 2429051 2431226 Vimu3g00264 3 2429051 2431226 ECH
Vimu6g02205 6 19353820 19357090 Vimu3g00264 3 2429051 2431226 PCT