Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02197 ATGAACAAAAATGGCGTCATTCCGTGGATGAGGCAGCAATGGCGGGGCATAGTGAAAGTGCGTTTGAAATGGGTGAAGAACCGAAGCCTCGATCACGTCATCGACAAGGAAACCGATCTCAAAGCGGCCTGTCTCCTGAAAGACGCTATCAATCGCTCTTCCACCGCCTTCCTCACGGCGAAATCCGTTGCAGACTGGCAGAAGCTCCTCGGCCTCACCGTCCCCGTTCTCCGCTTCCTCCGCCGCTACCCCACCCTCTTCCAAGAGTTCCCGCACCCGCGCTGGCCCTCTCTCCCCTGCTTCCGCCTCACTGACACTGCACTTTTTCTCCACTCCCAGGAACTGGCAATCCACCAAGCTCACCAAAACAACGCAGTCGAACGCCTCTCCAAGCTCCTCATGATGACCCGCTCCCGCGCCCTGTCCCTCTATTCCCTCCACTCGCTCAAGTGGGACCTCGGCTTACCCGACTCCTTCGAGAAAACCCTCGTCCCCAACTTCCCTAACGACTTCCAGTTTGTCAAGTCCAACGGTGTCGTTTCGCTCAAACTAGCACGATGGCCTGAGGAATTCGCTGTGTCCGCGCTGCAACAGAAAAACGAGTGTGGGACCCACTACCGGGAATTCAAGCGGGGACAATCGGCGTTGGCTTTTCCGATGAAGTTTCCCAGGGGTTACGGCGCGCAGAAGAAGGTGAGGACGTGGATGGAGGAGTTTCAGAAGCTGCCTTATGTTTCTCCCTATGCTGATTCCTCCAAGATTGATCCCAACAGCGATTTGATGGAGAAGCGCGTGGTTGGGGTTCTGCACGAGCTTTTGAGTTTAACTCTGCACAAGAAAACAAAGAGGAACTACTTGAGGAGCTTGAGGGAAGAGTTGAATCTTCCGCACAAGTTTACCCGGATTTTCACTCGGTATCCCGGCATCTTTTACCTCTCATTGAAGTGTAAAACGACCACTATTACTCTCAGGGAAGGGTACCAGAGTGGGAAACTGGTTGACCCCCACCCTCTTGTCCGACATAGAGATAAATTCTACCGTGTCATGCAGACGGGGCTTCTCTATCGCGGGGATGGGTCATTGAATCACGACGGCAACAATCCTTTGGTCGAGAATGATGAGCTAAGAAGTGAGGAATCCGGGGAGGAAGAGGTTGAAACGAGTGATGAATTATGTGAGGGTGAATCGAGTGATGAACTCTGCGAGGGTGAAGAGTGA 1218 0.5337 MNKNGVIPWMRQQWRGIVKVRLKWVKNRSLDHVIDKETDLKAACLLKDAINRSSTAFLTAKSVADWQKLLGLTVPVLRFLRRYPTLFQEFPHPRWPSLPCFRLTDTALFLHSQELAIHQAHQNNAVERLSKLLMMTRSRALSLYSLHSLKWDLGLPDSFEKTLVPNFPNDFQFVKSNGVVSLKLARWPEEFAVSALQQKNECGTHYREFKRGQSALAFPMKFPRGYGAQKKVRTWMEEFQKLPYVSPYADSSKIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTITLREGYQSGKLVDPHPLVRHRDKFYRVMQTGLLYRGDGSLNHDGNNPLVENDELRSEESGEEEVETSDELCEGESSDELCEGEE 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02197 405 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 15 382 IPR045040 GO:0003723
Vimu6g02197 405 MobiDBLite consensus disorder prediction 376 405 - -
Vimu6g02197 405 MobiDBLite consensus disorder prediction 357 405 - -
Vimu6g02197 405 Pfam Plant organelle RNA recognition domain 25 352 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02197 Vimu-Chr6 19293082 19298733 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02197 - - vun:114164383 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02197 6 19293082 19298733 Vimu6g02197 6 19293082 19298733 ECH
Vimu6g02197 6 19293082 19298733 Vimu3g01664 3 30745442 30748067 PCT