Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01664 ATGTTCTGCAAAACCAAAACCTATACTCTTTTCTACCATAACAATGCAAGAACTATATCAAGCCTCAAAGTAGTGTGGCGCAAGGACCCAACACTGGACCGAGCTATAGAGTACGACAAGCGTTACAAGCAATGTGCCCGCGTCGTCAAAGAAGTCCTCAACGAACCAGGCCAAGTCATTCCTCTACGCTACCTCGAGAAGCGCCGCGAAAGGATGCGCCTCAAGGTCAAAGCTGAAACCTTTATCAACCAAAACCCCGGTTTGTTCGATGTCTACTATAGTCGCATCAAACCCAAAACCGAACCGGTTCGCTTCATACGCCCCTCCGACCGCCTTCACTGCTTTCTCCAGGAAGAGCAACGAATTTTCTCTGAGAACGAACCCTTCATTGTCTCCAAGTTGTGTAAACTGTTAATGATGTCCAAGAACAAGTTCATCAGTGCTGATAAGTTGCTTAACGTGAAGAGGGAGTTCGGGTTCCCTAACGATTTTTTGGTTGATTTGGTTCCTCGGTATCCGCAATATTTTAGGTTAACTGGGTCTCCTGGAGAGGGGAAATCGTTTCTTGAATTGGTTGATTGGAACCCCGAGTTTTCAAAATCTGTTATTGAGAAAAGAGCCGAGGAGGAGAGTGAGCGATTGGGGATTAGGGTTAGGCCTAATTTCAATGTGGAGCTACCGCCAGGGTTTGTGTTGAAGAAGGAGATGAGAGAGTGGGTTAGGGATTGGCTGGAGCTTGATTATGTGTCCCCTTATCAGGATGTGTCCCATTTGGACCAGGCTTCCAGAGAGATGGAGAAGAGATCCGTTGGAGTGTTCCATGAACTGCTTTCTCTTTCCTTGCATAAGAGGATTCCGGTTCCAATCCTTGGAAAGTTTTGCGATGACTATAGGTTTTCCAATGCGTTTTCCACCACTTTTACCAGACATTCGGGGATATTCTATCTGTCCTTGAAAGGTGGGATTGAGACGGCAGTGCTGAGAGAAGCATACCGAGGTGAGGAGTTGATTGACCGTGATCCGTTGCTTCAGATAAAAGATAAATTTGTTGAGTTGTTGGAGGAGGGATGGCGGCAAAGAAAGGAGCAATTGATGTTGAAGCAAGAAAGGATTAAGGAAGATATGGAGCTGTTGGCCACGAAAGTTGGTGAATGA 1155 0.4615 MFCKTKTYTLFYHNNARTISSLKVVWRKDPTLDRAIEYDKRYKQCARVVKEVLNEPGQVIPLRYLEKRRERMRLKVKAETFINQNPGLFDVYYSRIKPKTEPVRFIRPSDRLHCFLQEEQRIFSENEPFIVSKLCKLLMMSKNKFISADKLLNVKREFGFPNDFLVDLVPRYPQYFRLTGSPGEGKSFLELVDWNPEFSKSVIEKRAEEESERLGIRVRPNFNVELPPGFVLKKEMREWVRDWLELDYVSPYQDVSHLDQASREMEKRSVGVFHELLSLSLHKRIPVPILGKFCDDYRFSNAFSTTFTRHSGIFYLSLKGGIETAVLREAYRGEELIDRDPLLQIKDKFVELLEEGWRQRKEQLMLKQERIKEDMELLATKVGE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01664 384 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 15 368 IPR045040 GO:0003723
Vimu3g01664 384 Pfam Plant organelle RNA recognition domain 28 357 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01664 Vimu-Chr3 30745442 30748067 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01664 - - vum:124828979 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01664 3 30745442 30748067 Vimu3g01664 3 30745442 30748067 ECH
Vimu6g02197 6 19293082 19298733 Vimu3g01664 3 30745442 30748067 PCT