Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02195 ATGCTGAGCGTGCTGCGCGTGCACCTCCCTTCTGATATTCCCATTGTAGGCTGTGAGCTCACGCCTTACGTGCTCCTACGCCGACCTGACAAGACCGTTACCACCGACGATGTCCCCGAAGCCGCCCCGTTAGATGGTCATTTCTTGCGCTACAAGTGGTTAGTTCTGCTGGTCTATCATTCCTCTCCTTTCTTGTTTTTCTTTGTTACTCTTAGTTGGTTGATACCTGAGTTTCAATGCGTGCGTGCTTTTGAATTTCATGTTACTAAAGTGAAGAGTGAAGTGTATCTAAGTATTGATCCTGTTTTTCTTCTATCATTTGACATGTGTTTGGCAATCTATGGAAGGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTATACATCCATCTGAGCAGGCCACACTGCAGTGCCTTGGTTGTCTAAAGGTTAAGGTACCTGTTGCCAAAAGTTACCACTGCACTCCAAAGTGTTTTTCAGATGCTTGGCAGCATCATCGTGTCTTACATGATCGTGCTGCAAGTTCAGGTAATGAAAATGGAAATGAGGAAGAAGAGTTATTTGGGCGATTTAATAATTCTGGATCTGGATCAATCACTACCACCTTATCTTCCTCTGCATCAAGTGCTAGCTTGACAAACGGGTCTGCACCTGTTTATCCAGCAGCCATTACACAACGAAATGGTGGTGAAACTTGGTTTGAAGTTGGACGATCTAAGACGTATACACCAACAGCTGATGACATTGGTCATGTCCTTAAATTTGAGTGTGCTGTAGTTGATGCAGAGACTAAACTTACTGTAGGGCATGCTAGCACTCTACTAACATCCCGTGTCATTCCTGCCCCTTCGCCTAGCCCACGCAGAATAATACATGTTGAGGGGATGGGACATTTGGATGCTGATGCACGCTTAACATCATCAGGAACATTTACTGTTCTATCATACAACATATTGTCTGATTCATATGCCTCAAATGATCTATACAATTACTGCCCTTCATGGGCTCTTTCCTGGCCATATCGCAGGCAAAATTTGTTACGAGAAATAGTTGTTTACCGTGCTGATATTATTTGTCTTCAAGAGGTTCAGAGTGATCATTACGAAGAATTTTTTTCTCCTGAACTGGACAAACATGGCTATTATGGTCTTTACAAAAGGAAAACAAATGAGGTATATAGTGGCAACATTAATACCATTGATGGGTGTGCAACATTCTTCCGAAGGGACAGATTTTCACATGTGAAAAAATACGAGGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACCACTCAGAAGAAAACTGCCTTGAATAGACTGGTTAAGGATAATGTTGCATTAATAGTTGTTTTAGAAGCAAAAGTTAACCAGCCTGTGGACAATCCTGGGAAAAGACAGCTTCTTTGCGTGGCAAATACACATGTAAATGTTCATCATGATTTAAAGGATGTCAAACTTTGGCAGGTGCATACTCTTTTGAAAGGATTGGAGAAAATTGCTGCTAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAGTTCCAGGAAGTGCTCCCCATGCACTTCTTGCAATGGGAAAGGTAGACCCATCCCATCCTGATTTAGCTGTTGATCCACTTAATATATTACGTCCTCACAGCAAGTTGGTTCATCAGTTGCCACTGGTCAGTGCTTATTCATCCTTTGCAAGAACAGTTGGTCTTGGATCTGAGCAGCATAAACGGAGACTAGACAATGTAACAAATGAACCTTTATTCACTAATGTAACCCGAGATTTTATTGGCTCTCTAGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTGTTGGAGCTATTGGATGAGGAGAGTTTGAGGAAAGACACCGCACTTCCTTCTCCTGAGTGGTCCTCTGATCATATAGCTCTGTTAGCTGAGTTTCGCTGCTGCAAGAATAGATCTAGGCGATGA 1989 0.4213 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPEAAPLDGHFLRYKWLVLLVYHSSPFLFFFVTLSWLIPEFQCVRAFEFHVTKVKSEVYLSIDPVFLLSFDMCLAIYGRYRVQSDKKVAVCSIHPSEQATLQCLGCLKVKVPVAKSYHCTPKCFSDAWQHHRVLHDRAASSGNENGNEEEELFGRFNNSGSGSITTTLSSSASSASLTNGSAPVYPAAITQRNGGETWFEVGRSKTYTPTADDIGHVLKFECAVVDAETKLTVGHASTLLTSRVIPAPSPSPRRIIHVEGMGHLDADARLTSSGTFTVLSYNILSDSYASNDLYNYCPSWALSWPYRRQNLLREIVVYRADIICLQEVQSDHYEEFFSPELDKHGYYGLYKRKTNEVYSGNINTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAVIPTTQKKTALNRLVKDNVALIVVLEAKVNQPVDNPGKRQLLCVANTHVNVHHDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVGLGSEQHKRRLDNVTNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02195 662 MobiDBLite consensus disorder prediction 176 195 - -
Vimu6g02195 662 CDD Deadenylase_CCR4 315 655 - -
Vimu6g02195 662 Pfam Endonuclease/Exonuclease/phosphatase family 316 646 IPR005135 GO:0003824
Vimu6g02195 662 FunFam Carbon catabolite repressor protein 4 1 282 660 - -
Vimu6g02195 662 SUPERFAMILY DNase I-like 308 656 IPR036691 -
Vimu6g02195 662 Gene3D Endonuclease/exonuclease/phosphatase 281 661 IPR036691 -
Vimu6g02195 662 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 224 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02195 Vimu-Chr6 19282898 19287483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02195 341 523 EF-hand Containing Proteins AT5G54130 24.737 4.53e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02195 K12603 - gmx:100775270 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02195 6 19282898 19287483 Vimu6g02195 6 19282898 19287483 ECH
Vimu6g02195 6 19282898 19287483 Vimu3g00278 3 2548501 2556202 PCT