Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00278 ATGGTGGTGTTTATTATTATTATTATTATTATTGATTGTGGAGTAATTTTAGAACAACCTTCTATTCGAATCCTCAGATCCATTTGCAAGGCTGGCGGGTATTTGGGTCAAGTAATGGCGGATCCGCCAGGATTGTTTTCGCTCTTGTCAAGAAGAAGAGAACGAAGAAGAAGAAAAGTAAAGCATGCTGAGCGTGGTTGCGAACTCACACCCTACGTCCTCCTTCGCCGTCCGGATAAGACCATATCTACCGACGATGTTCCCGAAACTGCCCCTTTAGATGGTCATTTCCTCCGCTACAAATGGTATGTTCCTCTCTCCGGTGTTATAACAAAACCTGTTTTTCGGTTTGTGTCGGAGTTGAAAAGAAGTGTGCTGAGTTTGGGAACTAGTTCGATTGTTTTGGCATTGTGGGAAACTGGGAATATGGTCAAGCTTGGTATTATTGCTATCTTCTTCTCTTCTTTTTTATATAAAGGTGGGAGTTCTGTAAGTAACTCCTGTGTGAGTTTAAGAGTTTTTGAGGGTAGGATGGAAGCTGATGCCACATATAGATTGAATGATATAATAGGAAGTGGAGACATCCTGGATCCCTATTTCCCTGGTCTCCAAAATGTCAATGAGTACTTGCAGCATCACAATAGGAATCCAAAATATTGGGGTTATCCTGTGTGCCTGTATATAGAGGCAGACACGGTGTCACACACCAACATCCTCCAAAGAAGCAAAGCGGGAAGCATTCTTGTTATCGTACTTAATTGGTCTGCATTCAAATGGTCAAGTGGAGAAAGATATAACTTCAGGTTTTTCTGTGCTGATGATCATATTACTTGTAACTGTCTCATGCAGTCTGGTTTTTGCCTGTATCGTGTACAGAGTGATAAAAAAGTTGCTGTCTGTAGCATACATCCATCAGAGCAAGCCACACTGCAATGCCTAGGTTGTGTTAAGGCCAAAATTCCTCTTTCTAAGAGTTACCATTGCACCACAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTACATGATCGTGCTGCAAGTGCCCTTAATGAAAATGGAAATGAGGAGGAAGAGGTATTTGGGCGCTTTAATAGTACTGGGTCTGGGACAATCAATTCCAGCTTATCTGCTTCTGCTTCAAGTGCTAGCTTGACAAATGGGTCTGCAACAAATTTGTATCCAGCTGCTATTACACAAAGAAGTGGTGAAACTTGGTTTGAAGTTGGACGATCTAAGACTTATACCCCTACTGCTGATGATGTTGGTCATGTCCTTAAGTTTGAGTGTGTTGTAGTTGATGCAGAGACAAAAATGCCTTTGGGGCCTGTTAACACTATACTAACTTCACGTGTCATTCCTGCTCCTTCACCTATTCCACGCCGGCAGATACGTGTTGATGGAGTGGGGCATTTAGATGCTGATGCGAGGATGACAACTTCAGGAACTTTTACTGTTTTATCCTACAATATATTGTCTGAAGCATATGCCTCAAGTGATCTATACAATTACTGCCCTTCGTGGGCACTTTCTTGGCCATATCGCCGCCAAAATTTGTTACGAGAAATTGTTGGTTACCGTGCAGACATTATTTGTCTTCAGGAGGTTCAAAGCGATCATTATGATGAATTTTTTTCTCCTGAACTGGACAAGCATGGATATTATGGTCTTTACAAGAGAAAAACCAATGAGGTGTACAGTAGCAACACAAATACAATTGATGGTTGTGCAACATTTTTCCGCAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGAATTTAACAAGGCTGCACAGTCTTTGACAGAGGCTACAATTCCAACCACTCAGAAAAAAAGTGCCTTGAACAGACTGGTTAAGGATAATGTTGCACTAATTGTTGTTCTAGAAGCAAAAGTTAACAATCAACCTTTTGATAATCCTGGGAAAAGGCAGCTTCTTTGTGTGGCAAACACACATGTAAATGTCCCCCAAGATTTAAAGGATGTGAAACTCTGGCAGGTTCACACTCTCTTAAAAGGGTTGGAGAAAATAGCTGCAAGCGCAGACATTCCAATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAAGTAGACACTTCACATCCTGATTTAGCAGTTGACCCACTTAACATTTTACGTCCTCACAGCAAGTTGGTTCATCAGTTACCACTGGTCAGTGCATACTCATCTTTTGCGAGAACAGTTAGCCTTGGATATGATCAGCATAAAAGGAGACTGGACGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATCGGCACTCTAGATTATATATTTTACACTGCGGATTCTTTAGTTGTGGAGTCATTATTGGAGTTACTAGACGAGGAGAGTTTGAGGAAGGACACTGCACTTCCTTCACCTGAATGGTCCTCAGATCACATAGCTCTCTTAGCCGAGTTCCGCTGCTGCAAGAATAAATCTAGGCGTTGA 2508 0.4159 MVVFIIIIIIIDCGVILEQPSIRILRSICKAGGYLGQVMADPPGLFSLLSRRRERRRRKVKHAERGCELTPYVLLRRPDKTISTDDVPETAPLDGHFLRYKWYVPLSGVITKPVFRFVSELKRSVLSLGTSSIVLALWETGNMVKLGIIAIFFSSFLYKGGSSVSNSCVSLRVFEGRMEADATYRLNDIIGSGDILDPYFPGLQNVNEYLQHHNRNPKYWGYPVCLYIEADTVSHTNILQRSKAGSILVIVLNWSAFKWSSGERYNFRFFCADDHITCNCLMQSGFCLYRVQSDKKVAVCSIHPSEQATLQCLGCVKAKIPLSKSYHCTTKCFSDAWQHHRVLHDRAASALNENGNEEEEVFGRFNSTGSGTINSSLSASASSASLTNGSATNLYPAAITQRSGETWFEVGRSKTYTPTADDVGHVLKFECVVVDAETKMPLGPVNTILTSRVIPAPSPIPRRQIRVDGVGHLDADARMTTSGTFTVLSYNILSEAYASSDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYDEFFSPELDKHGYYGLYKRKTNEVYSSNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEATIPTTQKKSALNRLVKDNVALIVVLEAKVNNQPFDNPGKRQLLCVANTHVNVPQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDTSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVSLGYDQHKRRLDGGTNEPLFTNVTRDFIGTLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNKSRR 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00278 835 CDD Deadenylase_CCR4 487 828 - -
Vimu3g00278 835 Gene3D Endonuclease/exonuclease/phosphatase 454 834 IPR036691 -
Vimu3g00278 835 SUPERFAMILY DNase I-like 480 829 IPR036691 -
Vimu3g00278 835 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 398 828 - -
Vimu3g00278 835 FunFam Carbon catabolite repressor protein 4 1 454 833 - -
Vimu3g00278 835 Pfam Endonuclease/Exonuclease/phosphatase family 488 819 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00278 Vimu-Chr3 2548501 2556202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00278 513 715 EF-hand Containing Proteins AT5G54130 25.701 6.85e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00278 K12603 - gmx:100819402 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00278 3 2548501 2556202 Vimu3g00278 3 2548501 2556202 ECH
Vimu6g02195 6 19282898 19287483 Vimu3g00278 3 2548501 2556202 PCT