Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02189 ATGGGCCTAATCAAAGCATGGTTCAGAGAGCTTCCATCAGGAGTCCTTGATGGACTTTCCCCTGAGCAAGTTATTGAGTGCAACACAGAAGAAGAGTCCGTTCAGCTTGTGAAGCAGCTAAAGCCAACTGAGTCAGCCTTGCTCAACTGGGCCATTGATCTCATGGCTGATGTTGTAGCTGAAGAGGATTACAACAAAATGGATGCAAGAAACATTGCAATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCATTAACTGCTCTGATGCATGCGGTGCAAGTGATGAATTTACTGAAGACACTAATACTGAACACACTGAGAAAACGTGAAGAAACAGCCGAAGGAGGATATTCGCCCATGTCATTTCGTTCATCTGATCGCCAATCTGAGGGTGACTATGATAGTCAGCAAGAAATGGATACTAGTGGTGAATTGAGGGAGACCAAGTCAGAAGATGATGATGATGACCATCATAATCATCATGTTAACTACAGTCCTACCAGTGAAGAGGACGAGGAGGCTGATGCATCATCAGTAAGTGAGATAGTGGAGTGCTTCTTGAAACGTTTGGATGAGAAAACAAAAAGATTCTCGGAAAAACCTGAGGGGTATTTACAAGAGAAATTAGAGAGCCCCAAGAGTTTCTCTTTAGATAATATCTTGGAATCCACTTTATCTTTTACTGACATAAAAACTGAGAATTCCTGCTCAAGTTCCTCTTCCGAAGATGACTCAAGAACAACTCTTACTGCCGAGGAATCAAATGCTGACACAAGTAGTTCATCAATAGGAAGCACAAGCACAAATGATGTGGAGATGATCGATAAATTTCCAGATCCTCTTTCTCTAGTTCCACTGTTTACATCTAGTTAA 879 0.4164 MGLIKAWFRELPSGVLDGLSPEQVIECNTEEESVQLVKQLKPTESALLNWAIDLMADVVAEEDYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILNTLRKREETAEGGYSPMSFRSSDRQSEGDYDSQQEMDTSGELRETKSEDDDDDHHNHHVNYSPTSEEDEEADASSVSEIVECFLKRLDEKTKRFSEKPEGYLQEKLESPKSFSLDNILESTLSFTDIKTENSCSSSSSEDDSRTTLTAEESNADTSSSSIGSTSTNDVEMIDKFPDPLSLVPLFTSS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02189 292 Pfam RhoGAP domain 2 82 IPR000198 GO:0007165
Vimu6g02189 292 MobiDBLite consensus disorder prediction 129 170 - -
Vimu6g02189 292 ProSiteProfiles Rho GTPase-activating proteins domain profile. 1 111 IPR000198 GO:0007165
Vimu6g02189 292 SUPERFAMILY GTPase activation domain, GAP 2 106 IPR008936 -
Vimu6g02189 292 MobiDBLite consensus disorder prediction 114 180 - -
Vimu6g02189 292 CDD RhoGAP 2 106 - -
Vimu6g02189 292 Gene3D Rho GTPase activation protein 1 111 IPR008936 -
Vimu6g02189 292 PANTHER MKIAA1688 PROTEIN 2 238 IPR044785 GO:0005096
Vimu6g02189 292 MobiDBLite consensus disorder prediction 233 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02189 Vimu-Chr6 19245085 19247308 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02189 - K20642 gmx:100812700 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02189 6 19245085 19247308 Vimu6g02189 6 19245085 19247308 ECH
Vimu6g02189 6 19245085 19247308 Vimu3g01717 3 31299557 31302220 PCT