Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01717 ATGACCGGAGTGGTCATGGTTACCAAGGGTGGTAGATGCGGCGGAGGTGGGAAGCGGTCGAGGGCGGCGCGAACCGCTGAGGAAGAAGAAGAGCAGCAGAACCAGCTCTCTCTCGTGGCGTTTCTCTTGGCGGCCATCAGAAAATCGATGGTTTCGTGTAGGGTGGACCCACCGGACGATGTAATCTCCACCGTCCATAACATGGAGATCGGATGGCCTACCAACGTTCAGCACATCACTCATGTCACCTTCGACCGCTTCAATGGTTTCCTCGGTCTTCCTTACGAGTTCCAAGTTGAGATCCCTGCTAGGGTCCCCAGTGCTAGAGTCTTGTTCTTGTATAAATTGTTGCAAAATGGGGAACTTCTCATTGTTTGGGATTTGGGGAGCATGTTGGTTAAATGCTTCGTTGGGCACGGGATGAATAGAGATTGGGCACATGTTAGGACATGGAATTCCTTGTACAAGTTCCTGCGATTTCTTGTCACCAATGCTTGCAGTGTAAGTGTGTTTGGCGTCTCAGCAGAATCTATGCAGTGTTCTTATGATTCTAAAGGAAACAGTGTCCCCACTATTCTCCTGCTAATGCAGGACCGGCTATACTCACAGAGAGGCTTAAAGGCTGAGGGTATATTTCGCATAAACCCAGAAAATAGTCAAGAGGAGCATGTGAGGGACCAGTTGAATAGGGGCATTGTGCCTGATGACATTGATGTGCACTGCTTGGCGGGACTAATTAAAGCCTGGTTCCGAGAGCTACCTTCAGGAGTGCTAGATGGACTTTCCCCTGAGCAAGTTCTTCAATGCAACACAGAAGAAGAATCTGTTGATCTTGTGAAGCAGCTAAAGCCAACTGAGTCTGCCTTACTCAGCTGGGCCATTGATCTCATGGCCGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCAAGAAATATTGCAATGGTTTTTGCTCCAAACATGACACAGATGTCTGATCCTCTAACTGCCCTGATGCACGCGGTTCAAGTGATGAACTTACTCAAGACACTCATCATGAAGACACTTCGAGAACGTGAAGAAACAACACCAGGTGGGTATTCTCCCATGTCTTTTCATTCATCGGGTCGCCAATCAGAGGATGAATACGACAGTCAGCGAGAAATGGACACTAGCGGTGAATTGAGAGGCGCCAAATCAGATTATGATGCTCACTATGGCCACAGCAGTGAAGGGGAGGCTGAATCTTTAAGCGAAATAGAGGAGTGCTTCTTGAAGCAGTTGGATGAGAACACAAAGGGATTCTCACAAGAACCTGCTGGTAATTTGGAGAAGTATGTTAGCACCATAAGTTACTCTGCTTATAGCATGGAACCTTCTATATCTGTTACTGATAACAAAGCTGGGAATTCCTGTTTGAGGACAACACTGACCTCAAGTGTTGACACAAGTAGTTCATCAATAGGATGTACAAGTACCAAAGATGTGGAGATAGTCGATAAGTATGCTGATTCTATTTCACCTGTAACACTCCTTGCTTCTAGCTAA 1530 0.4647 MTGVVMVTKGGRCGGGGKRSRAARTAEEEEEQQNQLSLVAFLLAAIRKSMVSCRVDPPDDVISTVHNMEIGWPTNVQHITHVTFDRFNGFLGLPYEFQVEIPARVPSARVLFLYKLLQNGELLIVWDLGSMLVKCFVGHGMNRDWAHVRTWNSLYKFLRFLVTNACSVSVFGVSAESMQCSYDSKGNSVPTILLLMQDRLYSQRGLKAEGIFRINPENSQEEHVRDQLNRGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESVDLVKQLKPTESALLSWAIDLMADVVEEEEFNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETTPGGYSPMSFHSSGRQSEDEYDSQREMDTSGELRGAKSDYDAHYGHSSEGEAESLSEIEECFLKQLDENTKGFSQEPAGNLEKYVSTISYSAYSMEPSISVTDNKAGNSCLRTTLTSSVDTSSSSIGCTSTKDVEIVDKYADSISPVTLLASS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01717 509 Gene3D CRIB domain 65 101 IPR036936 -
Vimu3g01717 509 SMART RhoGAP_3 187 350 IPR000198 GO:0007165
Vimu3g01717 509 CDD RhoGAP 190 346 - -
Vimu3g01717 509 PANTHER MKIAA1688 PROTEIN 22 419 IPR044785 GO:0005096
Vimu3g01717 509 Pfam P21-Rho-binding domain 69 99 IPR000095 -
Vimu3g01717 509 Pfam RhoGAP domain 190 324 IPR000198 GO:0007165
Vimu3g01717 509 MobiDBLite consensus disorder prediction 354 393 - -
Vimu3g01717 509 ProSiteProfiles CRIB domain profile. 70 83 IPR000095 -
Vimu3g01717 509 SUPERFAMILY GTPase activation domain, GAP 169 347 IPR008936 -
Vimu3g01717 509 Gene3D Rho GTPase activation protein 151 353 IPR008936 -
Vimu3g01717 509 ProSiteProfiles Rho GTPase-activating proteins domain profile. 173 354 IPR000198 GO:0007165
Vimu3g01717 509 SMART PBD_5 70 104 IPR000095 -
Vimu3g01717 509 MobiDBLite consensus disorder prediction 371 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01717 Vimu-Chr3 31299557 31302220 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01717 - - gmx:100801481 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01717 3 31299557 31302220 Vimu3g01717 3 31299557 31302220 ECH
Vimu6g02189 6 19245085 19247308 Vimu3g01717 3 31299557 31302220 PCT