Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02176 ATGCAGAGAATGGCCTACACGTTCTCGTTTCCGGAGGAGGTGCTGGAGCACGTGTTCTCCTTCATTGAGAGCGAGAGGGACCGGAACGCGATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAATGTTTTCGTGGGTAACTGCTATGCGGTGAGCCCTGTGATGGTGATCAAGCGGTTCCCGGAGTTGAGATCCATTGCGCTCAAGGGGAAGCCGCACTTCGCGGACTTCAACTTGGTCCCCGAGGGTTGGGGCGGTTACGTCTGTCCGTGGATCGCCGCCATGGCCTGCGCCTTCCCCTGCCTCGAAGAGATCAGACTCAAGAGGATGGTCATCACCGACGAGAGCTTGGAACTCATCGCGAAGTCCTTCAAAAACTTCAAGGTGCTGGTTCTCACTTCATGCGAGGGTTTCACCACTGACGGACTGGCCGCCATTGCTGCCAACTGCAGGTTTCTTTATTTCCTTTTCTCATTTGCTTATCGCTGTGCGAAACGGTACATTGCTCGACTTTGTGGATTATTATTGTTAGTGAAAGCAGCCAGTAGGAATTTGAAGGAGTTGGACTTGCAAGAGAGTGAAGTGGATGACCTTAGTGGGCACTGGCTAAGCCATTTTCCTGATTCCTACACGTCACTAGTGTCACTGAACATCTCTTGCTTAGGCAATGAGGTGAGTTTATCTGCACTGGAGCGTCTGCTTGGGAGGTGTCCCAACCTGCGGACCCTGCGCCTTAATCGTGCTGTGCCCCTTGATAGACTACCCAATCTACTTCGCCGTTGTCCTCAGCTGGTTGAGTTAGGCACTGGAGTTTACTCAACAGAGATGCGACCAGAGGTCTTCTCAAACCTGGAAGCCTCATTTTCTGAGTGCAAGCAGTTGAAGAGCTTGTCTGGTTTTTGGGACGTCCTCCCATCGTACCTCCCAGCTATCTACCCCATCTGCTCCAGGCTAACATCGTTAAACTTGAGTTATGCTATTATTCAGAGCCCTGATCTTATTAAGCTTATCAGTCAATGCCCAAATTTGTTGCGTTTGTGGGTTCTGGATTACATAGAAGATGCTGGTCTTTATAACCTTGCTGCATCATGTAAGGATTTAAGGGAGTTAAGGGTGTTTCCGTCTGACCCATTCGGTTTAGAACCAAATGTTGCATTGACAGAAAAGGGCCTTGTCTCTGTGTCTGAAGGTTGCCCCCGGCTCCAATCAGTTCTATATTTTTGTCGTCAAATGTCTAATGCAGCCCTGCACACAATTGCGCAGAACAGGCCTAATTTGACTCGTTTTCGGCTTTGTATCATTGAGCCTAGAACGCCCGATTATCTTACGCATGAGCCACTTGATTCTGGTTTTGGAGCCATTGTAGAACATTGCAAGGATCTGCAACGCCTATCTCTGTCTGGTCTTCTTACAGATCGTGTTTTCGAGTATATTGGGACTTACGGGAAAAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGAAAGTGACCTGGGGCTTCATCATGTGCTGTCTGGGTGTGATAATCTTAGGAAGCTGGAGATCAGAGACTGCCCCTTTGGTGACAAGGCGCTTTTGGCAAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCCTGCTCAGTGAGTTATGGAGCATGTAAGCTACTGGGTCAGAAAATGCCCAGACTCAACGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCTAGGCCGGATGATTGTGCTGTTGAGAAGATTTATATTTACAGGACTGTTGCCGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACAATGGAAGATGATTCTTCGCTAAGGCTTGAGTGA 1857 0.4933 MQRMAYTFSFPEEVLEHVFSFIESERDRNAISLVCKSWYEIERWCRRNVFVGNCYAVSPVMVIKRFPELRSIALKGKPHFADFNLVPEGWGGYVCPWIAAMACAFPCLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRFLYFLFSFAYRCAKRYIARLCGLLLLVKAASRNLKELDLQESEVDDLSGHWLSHFPDSYTSLVSLNISCLGNEVSLSALERLLGRCPNLRTLRLNRAVPLDRLPNLLRRCPQLVELGTGVYSTEMRPEVFSNLEASFSECKQLKSLSGFWDVLPSYLPAIYPICSRLTSLNLSYAIIQSPDLIKLISQCPNLLRLWVLDYIEDAGLYNLAASCKDLRELRVFPSDPFGLEPNVALTEKGLVSVSEGCPRLQSVLYFCRQMSNAALHTIAQNRPNLTRFRLCIIEPRTPDYLTHEPLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGESDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPDDCAVEKIYIYRTVAGPRLDMPGFVWTMEDDSSLRLE 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02176 618 Gene3D - 3 46 - -
Vimu6g02176 618 SUPERFAMILY F-box domain 6 42 IPR036047 GO:0005515
Vimu6g02176 618 CDD F-box_AtTIR1-like 9 46 - -
Vimu6g02176 618 SMART fbox_2 10 51 IPR001810 GO:0005515
Vimu6g02176 618 FunFam Transport inhibitor response 1 6 46 - -
Vimu6g02176 618 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 89 570 - -
Vimu6g02176 618 SMART LRR_CC_2 404 428 IPR006553 -
Vimu6g02176 618 SMART LRR_CC_2 105 129 IPR006553 -
Vimu6g02176 618 SMART LRR_CC_2 464 487 IPR006553 -
Vimu6g02176 618 SMART LRR_CC_2 513 537 IPR006553 -
Vimu6g02176 618 SMART LRR_CC_2 346 369 IPR006553 -
Vimu6g02176 618 SMART LRR_CC_2 130 155 IPR006553 -
Vimu6g02176 618 Pfam F-box 8 48 IPR041567 -
Vimu6g02176 618 FunFam Transport inhibitor response 1 178 609 - -
Vimu6g02176 618 SUPERFAMILY RNI-like 90 570 - -
Vimu6g02176 618 Gene3D Ribonuclease Inhibitor 47 609 IPR032675 -
Vimu6g02176 618 Pfam Transport inhibitor response 1 protein domain 67 113 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02176 Vimu-Chr6 19137480 19140651 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02176 K14485 - gmx:100779021 1116.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02176 6 19137480 19140651 Vimu6g02176 6 19137480 19140651 ECH
Vimu6g02176 6 19137480 19140651 Vimu3g01729 3 31453072 31455370 PCT