Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01729 ATGCGGCCCAAACTAGCCTACTCCTTCCCTGAGGAGGTGCTGGAGCACGTGTTCTCCTTTATCGAGTGCGATAAGGACCGTGGCTCGATCTCCCTCGTCTGCAAGTCCTGGTATGAGATCGAGCGCTGGTGCCGCCGGAGAGTCTTCGTCGGAAACTGCTACGCGGTCTCTCCGGCCACCGTCGTCAACCGCTTCCCCAAAGTGAGATCCATCACTATCAAGGGCAAGCCGCACTTCGCGGACTTCAATTTGGTCCCCGAGGGTTGGGGCGCTTACGTAGGCCCTTGGATCAAGGCCATGGCGGCTGCCTACCCCTGGCTTCAGGAGATCAGGCTTAAGAGGATGGTCGTCACCGATGAATGCTTGGAACTTATCGCCAAATCGTTCAAGAACTTCGGAGTGCTGGTGCTTACTTCTTGCGAGGGTTTTACCACTGATGGACTTGCTGCCATTGCCGCCCATTGCAGTGAAGTGGAGGACATTTGTGGGCACTGGCTTAGCCATTTTCCCGATTCGTACACATCCTTGGTTTCCCTTAATATTTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCCCTAGAGCGTCTGACTCTCCGCCTCAACCGTGCTGTGCCCCTAGATAAGCTGGCCAACCTTCTTCGCGGAGCTCCTCAGTTAGTTGAGTTAGGCACAGGAGCCTACACGAGTGAGATGCGGCCGGAGGTCTTTTCAAACCTGGCTGAAGCATTTGCTGGGTGCAGGCAATTGAAAAGCTTGTCAGGATTCTGGGACGTGCTACCCTCCTACCTTCCAGCTGTTTATCCTATCTGCTCCAACCTGACATCACTGAACATGAGTTATGCAACTATTCAAAGCCCTGATCTTATAAAGCTTGTTAGTCAGTGTGAGAATTTACAACGGTTATGGGTGCTGGATTACATAGAAGATGCTGGCCTTGAAGTGATTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCGTCTGATCCATTTGGGTTAGAACCAAATGTGGCATTGACTGAGCAGGGCCTTGTTTCTGTGTCTGAAGGCTGCTCCAAGCTTCAGTCCGTTCTATATTTTTGTCGTCAAATGTCTAATGTGGCCTTGCTTACAATTGCCAGGAACAGACCTAATATGACTCGTTTTAGACTGTGTATTATTGAGCCGCAAGTTCCAGACTATCTTACCCAAGATCCTCTGGATGCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCGTCGCCTTTCCCTTTCCGGGCTTCTCACTGACCGCGTTTTTGAGTATATTGGGACTTACGGTAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCCGGAGATAGCGATTTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTTTTAGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTATGGAGCATGTAAACTTCTGGGTCAGAAAATGCCGATGCTTAATGTTGAAGTGATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGATAATAGTCCTGTTGAGAAGCTATACATATACAGGACTGTTTCTGGGCCAAGATTGGACATGCCAGGCTATGTATGGAGAATGGAAGATGATTCTGCATTAAGAATTTCTTGA 1704 0.4965 MRPKLAYSFPEEVLEHVFSFIECDKDRGSISLVCKSWYEIERWCRRRVFVGNCYAVSPATVVNRFPKVRSITIKGKPHFADFNLVPEGWGAYVGPWIKAMAAAYPWLQEIRLKRMVVTDECLELIAKSFKNFGVLVLTSCEGFTTDGLAAIAAHCSEVEDICGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLTLRLNRAVPLDKLANLLRGAPQLVELGTGAYTSEMRPEVFSNLAEAFAGCRQLKSLSGFWDVLPSYLPAVYPICSNLTSLNMSYATIQSPDLIKLVSQCENLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCSKLQSVLYFCRQMSNVALLTIARNRPNMTRFRLCIIEPQVPDYLTQDPLDAGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKMPMLNVEVIDERGPPDSRPDNSPVEKLYIYRTVSGPRLDMPGYVWRMEDDSALRIS 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01729 567 Gene3D - 1 45 - -
Vimu3g01729 567 SMART LRR_CC_2 353 377 IPR006553 -
Vimu3g01729 567 SMART LRR_CC_2 462 486 IPR006553 -
Vimu3g01729 567 SMART LRR_CC_2 413 436 IPR006553 -
Vimu3g01729 567 SUPERFAMILY F-box domain 4 43 IPR036047 GO:0005515
Vimu3g01729 567 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 88 518 - -
Vimu3g01729 567 Gene3D Ribonuclease Inhibitor 46 558 IPR032675 -
Vimu3g01729 567 FunFam Transport inhibitor response 1 46 558 - -
Vimu3g01729 567 Pfam F-box 7 47 IPR041567 -
Vimu3g01729 567 SUPERFAMILY RNI-like 34 516 - -
Vimu3g01729 567 CDD F-box_AtTIR1-like 8 45 - -
Vimu3g01729 567 SMART fbox_2 9 50 IPR001810 GO:0005515
Vimu3g01729 567 FunFam Transport inhibitor response 1 5 45 - -
Vimu3g01729 567 Pfam Transport inhibitor response 1 protein domain 66 112 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01729 Vimu-Chr3 31453072 31455370 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01729 K14485 - gmx:100809794 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01729 3 31453072 31455370 Vimu3g01729 3 31453072 31455370 ECH
Vimu6g02176 6 19137480 19140651 Vimu3g01729 3 31453072 31455370 PCT