Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02171 ATGGAACAGAATTCTGTACATATATATTTAGAAGACCAGGTGCTTGATCATTGTATCAGGATGGACAAGGTGAAGAGGTTGACCTCTGAAAATGGTGTGGTGATTTTCACGAAGAGCTCTTGTTGCCTCTGCTATGCAGTCAACATTCTGTTTCAAGAACTTAGGGCGAATCCTCTGGTTTATGAGATTGATCATGACCCTGAAGGCAGAGAAATAGAGAAAGCTTTGTTAAAGCTAGGGTGCAATGCTCCAGTCCCAGCTGTGTTCATCGCAGGGAAGCTAATTGGATCCACCAATGAAATCATGTCCCTCCACCTAAGAGGTTCACTCACTCCAATGCTGAAAGGCCAGCCTTTGTCTTGA 363 0.4408 MEQNSVHIYLEDQVLDHCIRMDKVKRLTSENGVVIFTKSSCCLCYAVNILFQELRANPLVYEIDHDPEGREIEKALLKLGCNAPVPAVFIAGKLIGSTNEIMSLHLRGSLTPMLKGQPLS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02171 120 NCBIfam glutaredoxin-like family 24 115 IPR011905 -
Vimu6g02171 120 PANTHER GLUTAREDOXIN 21 115 IPR011905 -
Vimu6g02171 120 ProSiteProfiles Glutaredoxin domain profile. 21 120 - -
Vimu6g02171 120 FunFam Glutaredoxin family protein 21 118 - -
Vimu6g02171 120 CDD GRX_GRXh_1_2_like 33 113 - -
Vimu6g02171 120 SUPERFAMILY Thioredoxin-like 21 116 IPR036249 -
Vimu6g02171 120 Gene3D Glutaredoxin 20 118 - -
Vimu6g02171 120 Pfam Glutaredoxin 33 95 IPR002109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02171 Vimu-Chr6 19102477 19102943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02171 21 115 Miscellaneous Gene Families AT4G15670 51.579 2.51e-34 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02171 K03676 - gmx:100499748 164.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02171 6 19102477 19102943 Vimu6g02171 6 19102477 19102943 ECH
Vimu6g02171 6 19102477 19102943 Vimu3g01731 3 31508790 31512457 PCT