Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02170 ATGGATAGAGTTAAGGACTTGGCATCAAAGAAGGCTGCTGTTATATTCACCAAGAGTTCATGCTGCATGTGTCACAGCATCAAGCAACTTTTCTATGAGCTTGGAGCAAGCCCAGCAGTTCATGAGCTTGACAATGATTCCTATGGAAGGGAAATGGAGTGGGCTTTGAGGGGTATGGGTTGCAATCCTTCAGTCCCAGCAGTGTTCATAGGTGGAAAATTTGTGGGGTCTTCCAAAGATATCATATCCCTCCATGTTGATGGCTCTCTCAAACAATTGCTCATGGATGCAAAGGCCATCTGGTTTTAG 309 0.4498 MDRVKDLASKKAAVIFTKSSCCMCHSIKQLFYELGASPAVHELDNDSYGREMEWALRGMGCNPSVPAVFIGGKFVGSSKDIISLHVDGSLKQLLMDAKAIWF 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02170 102 NCBIfam glutaredoxin-like family 4 101 IPR011905 -
Vimu6g02170 102 Pfam Glutaredoxin 14 75 IPR002109 -
Vimu6g02170 102 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Vimu6g02170 102 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Vimu6g02170 102 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Vimu6g02170 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Vimu6g02170 102 CDD GRX_GRXh_1_2_like 12 93 - -
Vimu6g02170 102 Gene3D Glutaredoxin 1 100 - -
Vimu6g02170 102 PANTHER GLUTAREDOXIN 1 101 IPR011905 -
Vimu6g02170 102 SUPERFAMILY Thioredoxin-like 1 101 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02170 Vimu-Chr6 19100058 19100366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02170 1 102 Miscellaneous Gene Families AT4G15700 48.039 1.37e-35 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02170 K03676 - gmx:100788094 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02170 6 19100058 19100366 Vimu6g02170 6 19100058 19100366 ECH
Vimu6g02170 6 19100058 19100366 Vimu3g01733 3 31537506 31538436 PCT
Vimu3g01731 3 31508790 31512457 Vimu6g02170 6 19100058 19100366 PCT