Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02165 ATGGGAGTGGTAACTGTTGCCGAATTGAAGCCTAGCATTTCAGGAAAAAGGACCTTTCGTCCAAGCTCAAGCATAAGACATGCCACTGAATGGCCAATATCTGACGTTTCTAGTGATCTCACCATCGAAGTAGGAGCATCGGCCTTCGCACTTCACAAGTTTCCTCTTGTTTCTCGGAGTGGAAGAATTCGGAAGCTGCTGTTAGAAGCAAAAGATTCGAAAGTTTTACGCATAAGTCTCCCAAATGTGCCAGGTGGAGCAGAGGCATTTGAGCTAGCTGCCAAATTTTGCTATGGAATCAATGTTGAGATCACTCTCTCAAATATTGCCTTGCTACGTTGCACGGCTCATTTTCTTGAAATGACAGAAGAATTTGCGGAGAAAAACTTAGAATCCAGAGTTGAAGCATACCTTAGGGACACAGTGCTACCTAACATATCAAGCACAGTGTATGTTCTTCACAGTTGTGAGGCCCTCCTTCCAATGTCAGAGGAAATAAACCTAGTCAATAAGCTAATCAATGCAATTGCAAACAACGCGTGCAAAGAGCAGCTTACATCTGGTTTACTAAAACTCGATCATAATTTCCCTTCCAAAACCACACCAACCATGGAGCCAGAAACACCCGCAGATTGGTGGGGGAAGTCTTTCAATGTTCTTAGTCTTGAGTTCTTCCAACGAGTTGTATCTGTTGTGAAGTCAAAGGGACTGAAACAGGACATGATCAGCAAGATATTGATGAACTATGCACATGGTTCTCTTCAGGGGATTGGTGTTAGAGATCCCCAAGTGGTGAAAGGAAGTCTTCATGACATGGAATTGCAAAAGAAACAAAGGGTCGTTGTTGAAACCATAGTTGGCTTACTCCCAACTCACTCGAGGAAAAGCCCTGTTCCAATGGGATTCCTCTCAAGTTTGCTGAAAGCTGCAATAGCAGCACCTGCATCAACTCATTGCAAATCTGATTTGGAGAGGCGAATTAGTCTTCAACTAGACCAGGCAATTCTCGAAGACATCTTAATCCCAACAAATTCACCTCAAAACACCCACAATACTATGTATGACACTGACTCAATTCTGAGGATCTTTTCTATTTATCTAAACATGGACCAAGAGGACGGAGAAGACAGTGATAACTACGTTGATGAAAGCCAAATGGTGTATGACTACGACAGCCCTGGATCTCCAAAACAAAGCTCAATTATAAAGGTATCGAAATTGCTGGACAGTTATCTCGCTGAAGTAGCTCTAGACTCAAACTTGTCGCCCTCAAAATTCACAGCACTTGCAGAACTACTTCCAGATCATGCACGTGTTGCAAGTGATGGACTCTATAGAGCAGTTGACATCTTCCTCAAGGTTCATCCAAACATGAAGGACTCAGAGAGATATCGGTTATGCAAAACCATTGATTGTCAGAAACTGTCTCAAGAAGCATGCAGCCATGCAGCACAGAATGAAAGGCTACCAGTGCAGATGGTGGTTCAAGTGCTTTACTTCGAGCAAATGAGGCTTCGCAACGCCATGAATGGAGGGCACAACCAGTTCTTCTTCGGTCATCAGTTTCCTCACCGTTCAGGAAGCGGTGCAGGGAGTGGAGCTATTTCCCCTAGAGATAACTATGCATCAGTGAGAAGAGAGAACAGAGAATTGAAGCTTGAAGTAGCAAGAATGAGAATGAGGCTCACTGACTTGGAGAAAGACCACGTGTCTATGAAGCAGGAGCTTGTTAAGACTCACCCTGCCAACAAGTTGTTCAAATCATTCACCAGAAAGCTGAGTAAGCTCAATGCTCTGTTCAGGATAAACAGCATCAAGCCAATCGGTGGCAAGGCTTGTTCAGAAACTCGCTTCCCTTTTCCAAAGCGAAGACGCCACTCTGTTTCATAA 1890 0.4392 MGVVTVAELKPSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASAFALHKFPLVSRSGRIRKLLLEAKDSKVLRISLPNVPGGAEAFELAAKFCYGINVEITLSNIALLRCTAHFLEMTEEFAEKNLESRVEAYLRDTVLPNISSTVYVLHSCEALLPMSEEINLVNKLINAIANNACKEQLTSGLLKLDHNFPSKTTPTMEPETPADWWGKSFNVLSLEFFQRVVSVVKSKGLKQDMISKILMNYAHGSLQGIGVRDPQVVKGSLHDMELQKKQRVVVETIVGLLPTHSRKSPVPMGFLSSLLKAAIAAPASTHCKSDLERRISLQLDQAILEDILIPTNSPQNTHNTMYDTDSILRIFSIYLNMDQEDGEDSDNYVDESQMVYDYDSPGSPKQSSIIKVSKLLDSYLAEVALDSNLSPSKFTALAELLPDHARVASDGLYRAVDIFLKVHPNMKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMVVQVLYFEQMRLRNAMNGGHNQFFFGHQFPHRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKTHPANKLFKSFTRKLSKLNALFRINSIKPIGGKACSETRFPFPKRRRHSVS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02165 629 Gene3D Potassium Channel Kv1.1; Chain A 26 142 IPR011333 -
Vimu6g02165 629 Coils Coil 541 575 - -
Vimu6g02165 629 SUPERFAMILY POZ domain 22 123 IPR011333 -
Vimu6g02165 629 ProSiteProfiles NPH3 domain profile. 211 504 IPR027356 -
Vimu6g02165 629 PANTHER OS12G0117600 PROTEIN 34 574 IPR043454 -
Vimu6g02165 629 Pfam NPH3 family 211 480 IPR027356 -
Vimu6g02165 629 FunFam BTB/POZ domain-containing protein At1g03010 16 134 - -
Vimu6g02165 629 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Vimu6g02165 629 Pfam BTB/POZ domain 37 123 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02165 Vimu-Chr6 19072198 19075597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02165 1 454 EF-hand Containing Proteins AT2G47860 59.588 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02165 - - gmx:100776688 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02165 6 19072198 19075597 Vimu6g02165 6 19072198 19075597 ECH
Vimu6g02165 6 19072198 19075597 Vimu3g01735 3 31589941 31592217 PCT