Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01735 ATGTCTACGCCATGCAATAATTCAGCCAGGTTTGTAAATTACAGGCCGATATCTGATGTCTCTAGTGATCTCACCATTGAAGTAGGAGCTTCAAGCTTTGCACTTCACAAGGTAAAGAAATTACAGTTTCCTCTTGTTTCTAGGAGTGGAAGGATTCGGAAAATGCTATTAGAAGCAAAAGATTCAAAAGTTTCACGGATAAGTCTCCCAAACGTGCCGGGTGGTGCAGAGGCATTTGAGCTGGCTGCCAAGTTCTGTTATGGAATCAATGTTGAGTTCACCCTCTCCAATGTTGCCATGCTAAAATGTGTTGCTCATTTTCTAGAAATGACAGAAGAGTTCTCAGAGAAAAACCTGGAGACAAGAGCAGAAGCATACCTAAAGGAAACGGTGCTACCAAATATATCAAACACAATATCTGTTCTTCACCGTTGTGAAACTCTTGTCCCCACTTCAGAAGAGATTAGTCTTGTCAGCAGACTAATCAATGCAATTGCAAATAATGCATGTAAAGAACAGCTCACCACTGGTTTACAAAAGCTGGACCATAACTTCCCTTCTAAAACCATAACAAACATGGAACCCGAAACACCCTCAGAATGGTGGGGAAAATCTCTCAATGTTCTTAGTCTTGATTTCTTCCAAAGAGTTTTGTCTGCAGTGAAGTCAAAGGGACTAAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCACATAATTCTCTTCAAGGGATTGTTAGGGACCACCATGCAGTGAAAGGATGTTTTCCCGACTTAGAATTGCAGAAGAAACAAAGAGTCATTGTTGAAGCCATTTCTGGCTTACTACCAACACAATCAAGGAAAAGCCCGGTTCCAATGGCATTTCTCTCAAGCTTGTTGAAAGCTGCAATAGCTGCATCGGCATCCACTTCTTGCAGATCTGACTTGGAGAGAAGAATTGGTCTACAACTTGAACAGGCAATTCTCGAAGACATCCTAATCCCAACAAATTCACATCAAAATACCCATGGCACCATTTATGACACGGATTCAATTTTGAGAATTTTTTCCAATTTTCTGAACTTGGATGAGGAGGACGAAGAGGATCATAATCACTTGAGAGATGAAAGTGAAATGGTTTATGACTATGACAGCCCCGGATCTCCAAAACAAAGCTCAATTATGAAGGTATCAAAATTGATGGACAACTATATTGCCGAAGTCGCACTAGACCCAAACTTGTTGCCATCAAAGTTCATCTCCCTTGCTGAACTACTTCCAGATCACGCACGTATTGTGAGTGATGGACTCTATAGAGCTGTTGATATCTTCCTTAAGGTTCACCCAAACATAAAGGATTCAGAGAGATACCGGCTGTGCAAAACCATTGATTGTCAGAAACTGTCTCAAGAAGCGTGCAGCCATGCAGCACAAAATGAAAGGCTACCAGTGCAGATGGCAGTGCAGGTTCTATACTTTGAGCAAATAAGGCTTCGAAATGCGATGAACGGAGGGCACAGCCAATATCTGTTTGGAGGAGTGAATGGTCAATTCCCTCATCGTTCAGGAAGCGGAGCCATTTCCCCCAGAGACAACTATGCATCAGTGAGAAGGGAGAACCGAGAACTGAAGCTAGAAGTTGCAAGAATGAGAATGAGGCTGACTGACTTGGAGAAAGATCACGTTAACATGAAGCAGGAGCTAGTGAGATCTCACCCTGCCAATAAGCTATTCAAATCACTCACCAAAAAACTAAGCAAGCTCAATGCTCTATTTCGGATCAACAGTACCAAGCCAAATGGCTCTGAAACTCGCTTCCCTTTCCCCAAGAGAAGGCGTCACTCAGTTTCATGA 1839 0.422 MSTPCNNSARFVNYRPISDVSSDLTIEVGASSFALHKVKKLQFPLVSRSGRIRKMLLEAKDSKVSRISLPNVPGGAEAFELAAKFCYGINVEFTLSNVAMLKCVAHFLEMTEEFSEKNLETRAEAYLKETVLPNISNTISVLHRCETLVPTSEEISLVSRLINAIANNACKEQLTTGLQKLDHNFPSKTITNMEPETPSEWWGKSLNVLSLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGIVRDHHAVKGCFPDLELQKKQRVIVEAISGLLPTQSRKSPVPMAFLSSLLKAAIAASASTSCRSDLERRIGLQLEQAILEDILIPTNSHQNTHGTIYDTDSILRIFSNFLNLDEEDEEDHNHLRDESEMVYDYDSPGSPKQSSIMKVSKLMDNYIAEVALDPNLLPSKFISLAELLPDHARIVSDGLYRAVDIFLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHSQYLFGGVNGQFPHRSGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVNMKQELVRSHPANKLFKSLTKKLSKLNALFRINSTKPNGSETRFPFPKRRRHSVS 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01735 612 ProSiteProfiles NPH3 domain profile. 200 492 IPR027356 -
Vimu3g01735 612 SUPERFAMILY POZ domain 4 112 IPR011333 -
Vimu3g01735 612 Gene3D Potassium Channel Kv1.1; Chain A 11 133 IPR011333 -
Vimu3g01735 612 PANTHER OS12G0117600 PROTEIN 18 573 IPR043454 -
Vimu3g01735 612 Pfam NPH3 family 200 468 IPR027356 -
Vimu3g01735 612 Pfam BTB/POZ domain 21 129 IPR000210 GO:0005515
Vimu3g01735 612 Coils Coil 528 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01735 Vimu-Chr3 31589941 31592217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01735 6 442 EF-hand Containing Proteins AT2G47860 59.091 6.54e-180 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01735 - - gmx:100814622 1053.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01735 3 31589941 31592217 Vimu3g01735 3 31589941 31592217 ECH
Vimu6g02165 6 19072198 19075597 Vimu3g01735 3 31589941 31592217 PCT