Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02104 ATGACTTTTTCTCTCTTTTCTTGTCTCCTTTTCCTTCTTTCTGTCTTTTCCACCCTTTCTCACTCCCTCACTCCCCATTCCCACCACCACCCTCACTCTGCCACACACAACTACAGAGATGCTCTCACAAAATCCATCCTTTTTTTTGAGGGTCAGAGGTCAGGGAAGCTCCCTTCTAACCAGAGGATGTCTTGGAGGAGGGACTCTGCTCTATCTGATGGCTCCGCCATGAATGTTGATTTGGTTGGAGGGTATTACGATGCTGGGGACAATGTCAAGTTTGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCTTGGAGTGTTATTGAGTTTGGTGGGGTGATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGGCACAGATTATCTTCTTAAAGCCACTGCACATCCAGACACCATTTATGTCCAGGTGGGAGATGCTGAGAAGGACCACGCTTGTTGGGAGAGACCCGAGGACATGGACACCCCAAGAAGTGTTTTTAAAGTAGATAAAAACAACCCTGGTTCGGATGTGGCTGCAGAAACTGCTGCGGCTCTTGCAGCTGCTTCTCTGGCTTTCAAGAAAACTGACCCAGCCTATTCCAAAACTTTGGTTAGGAGGGCTATTCGTGTTTTCCAGTTTGCTGATAAATACAGGGGATCCTACAGCAATGGCTTGAAGTCCGTTGTGTGCCCCTTTTATTGCTCCTACTCTGGTTATCAGGATGAGCTGTTGTGGGGAGCTGCTTGGCTTCACAAGGCTACTAAGAACCCAATGTACCTAAACTACATTAAAGTGAATGGACAGACCCTTGGGGCTGCAGATTCTGACAATACCTTTGGATGGGATAACAAGCATGTTGGAGCAAGGATACTGCTTTCTAAGGAATTTCTTGTTCGGAAGGTGCAATCCCTGCATGACTACAAGGGGCATGCAGACAATTTTATCTGTTCTGTTATCCCCGGTGGACTTCTGTTCAAGATGGGTGATAGCAATATGCAGTATGTGACTTCCACCTCCTTCATACTCTTAGCTTATGCTAAGTATTTAACCAAAGCCCATGTGGTTGTGAACTGCGGTGGAACCACGGTGACTCCAAAAAGACTACGTGCTATAGCCAAAAAACAGGTGGATTATCTGTTAGGAGAGAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCTACGGTTTCCGCGAAGGATACACCACAGGGGCTCATCGCTGCCGTCCATTGGTGTTCACCCTGGCAAGATCCAATGCTCGGCAGGGTTCAGTGTGATGAATTCAGAATCACCCAATCCCAACACTCTAGTGGGTGCCGTTGTTGGAGGGCCAGATCTGAATGATCGGTTCCCTGATGAACGGTCAGATTACGAGCAATCAGAACCTGCTACTTATATCAACGCACCTCTTGTGGGATCACTTGCTTATCTCGCACACTCTTCTGGCCAACTCTAG 1473 0.4786 MTFSLFSCLLFLLSVFSTLSHSLTPHSHHHPHSATHNYRDALTKSILFFEGQRSGKLPSNQRMSWRRDSALSDGSAMNVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGVMKGELQNAREAIRWGTDYLLKATAHPDTIYVQVGDAEKDHACWERPEDMDTPRSVFKVDKNNPGSDVAAETAAALAAASLAFKKTDPAYSKTLVRRAIRVFQFADKYRGSYSNGLKSVVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQTLGAADSDNTFGWDNKHVGARILLSKEFLVRKVQSLHDYKGHADNFICSVIPGGLLFKMGDSNMQYVTSTSFILLAYAKYLTKAHVVVNCGGTTVTPKRLRAIAKKQVDYLLGENPLKMSYMVGYGLRFPRRIHHRGSSLPSIGVHPGKIQCSAGFSVMNSESPNPNTLVGAVVGGPDLNDRFPDERSDYEQSEPATYINAPLVGSLAYLAHSSGQL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02104 490 Gene3D - 34 487 IPR012341 GO:0005975
Vimu6g02104 490 PANTHER ENDO-1,4-BETA-GLUCANASE 10 486 - -
Vimu6g02104 490 FunFam Endoglucanase 34 488 - -
Vimu6g02104 490 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 456 474 IPR033126 -
Vimu6g02104 490 SUPERFAMILY Six-hairpin glycosidases 35 487 IPR008928 GO:0005975
Vimu6g02104 490 Pfam Glycosyl hydrolase family 9 38 479 IPR001701 GO:0004553|GO:0005975
Vimu6g02104 490 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 383 409 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02104 Vimu-Chr6 18697046 18699209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02104 7 486 Glycoside Hydrolase AT1G02800 75.101 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02104 K01179 - gmx:100793900 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02104 6 18697046 18699209 Vimu6g02104 6 18697046 18699209 ECH
Vimu6g02104 6 18697046 18699209 Vimu3g01797 3 32536404 32538681 PCT