Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01797 ATGACTTTCTCCCTTTCCTTCACCATTCTGCTTTCCCTTCTCTCTGTTTTTCTGCTACTTGCCAATGCCTCTGCACTCCATTACAATCACCCCATTCACCATCGCCACCCTCGTTTTGCCACTCATGACTACAGAGATGCTCTCACCAAATCCATTCTTTTCTTTGAAGGCCAGAGGTCAGGGAAGCTCCCTCCTAACCAGAGAATGTCTTGGAGGAGGGACTCTGCTCTTTCTGATGGCGCCACCATGCGTGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAACGTCAAATTTGGCTTCCCCATGGCCTTCACCACCACCATGCTCTCATGGAGCGTTATTGAGTTTGGTGGGCTTATGAAAGGTGAGTTGCAGAATGCCAGAGTGGCCATTCGCTGGGCCACTGATTATCTTCTCAAAGCTACTGCACATCCCAATACCATTTATGTTCAGGTGGGGGATGCTAAGAAGGACCATTCTTGTTGGGAGAGACCAGAGGACATGGACACTCCAAGAAGTGTGTTCAAAATAGATGCAAAGACACCTGGTTCAGAAGTTGCCGCGGAAACTGCTGCAGCTCTTGCAGCTGCTTCTCTGGTTTTTAGAAGAACTGACCCCACATACTCAAAAGTTTTAGCTAGAAGGGCCATCAGGGTATTCCAGTTTGCTGATAAATACAGAGGATCCTACAGCAATGCCTTGAAACCCTTTGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAAGAATCCAATGTACCTAAACTACATTAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCCGGAGCTAGAATACTTCTCTCCAAGGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGGCACGCGGACAATTTCGTTTGTTCTCTAATTCCTGGGACATCTTTCTCTTCCACCCAGTATACCCCAGGTGGGCTTCTTTTTAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTGCTGTTAACATATGCCAAATACTTGACCTCAGCTCATACGGTTGTTAACTGTGGCGGAATCGCAGTAACACCAAAGAGACTCCGGTCAATAGCTAAGAAACAGGTGGATTACTTGCTTGGAGACAACCCCTTAAAGATGTCGTACATGGTGGGGTATGGTCCAAGATACCCAAGAAGGATACACCACAGGGGTTCATCTCTACCGTCGATGGGTGTACACCCTGGAAAGATCCAATGTCGTGCAGGGTTCAGTGTGATGAATTCACAATCCCCCAACCCAAACATTCTAGTGGGGGCGATTGTGGGTGGACCGGACCAACATGATAGGTTCCCAGATGAACGGTCAGATTATGAGCAATCAGAGCCGGCCACATACATTAACTCACCCCTTGTAGGAGCACTGGCGTATCTTGCACACTCATTTGGTCAACTCTAG 1524 0.4816 MTFSLSFTILLSLLSVFLLLANASALHYNHPIHHRHPRFATHDYRDALTKSILFFEGQRSGKLPPNQRMSWRRDSALSDGATMRVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQNARVAIRWATDYLLKATAHPNTIYVQVGDAKKDHSCWERPEDMDTPRSVFKIDAKTPGSEVAAETAAALAAASLVFRRTDPTYSKVLARRAIRVFQFADKYRGSYSNALKPFVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLIPGTSFSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAHTVVNCGGIAVTPKRLRSIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSMGVHPGKIQCRAGFSVMNSQSPNPNILVGAIVGGPDQHDRFPDERSDYEQSEPATYINSPLVGALAYLAHSFGQL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01797 507 Pfam Glycosyl hydrolase family 9 44 497 IPR001701 GO:0004553|GO:0005975
Vimu3g01797 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 473 491 IPR033126 -
Vimu3g01797 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 400 426 IPR018221 -
Vimu3g01797 507 SUPERFAMILY Six-hairpin glycosidases 41 505 IPR008928 GO:0005975
Vimu3g01797 507 FunFam Endoglucanase 40 505 - -
Vimu3g01797 507 PANTHER ENDO-1,4-BETA-GLUCANASE 13 502 - -
Vimu3g01797 507 Gene3D - 39 507 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01797 Vimu-Chr3 32536404 32538681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01797 1 503 Glycoside Hydrolase AT1G02800 75.595 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01797 K01179 - gmx:100777718 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01797 3 32536404 32538681 Vimu3g01797 3 32536404 32538681 ECH
Vimu6g02104 6 18697046 18699209 Vimu3g01797 3 32536404 32538681 PCT