Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02096 ATGAGTACAAAGTACTTCTCTAGCATTATATACGAAATACTGGTCCTCTCTTTCTATTGTTCTGTATTCTATGTTCTTCATCTAAGTCGCTCCCTCTCCTTAGCTCCATGCAACTCTTCTTGCACTGGATTCAGAACTTTGTCGCCTCATAAGTTTCAACTTACTGCTGCTCAAGCAGACATGAAGGGGCTAGTGGCAATGCTTTTCCTTGTTGCAATATGCGCTGCTGTGGAAAGCAACGGAGAAGAGAAAGGTGGACCATGTAAACAAAATGCGTTGAATGCTAGGCCTCACAGTGTGTCGATCTTGGAGTTTGGGGCTGTCGGAGATGGAATAACACTGAACACGGTTGCGTTCCAAAACGCAATATTTTATCTCAAGTCATTTGCTGACAAAGGGGGTGCCCAACTATATGTTCCATCTGGTACATGGCTTACTGGGAGTTTTAACCTCACCAGTCACCTCACTCTGTTCCTTGAGAGAGGTGCTACCATCATTGCATCTCAGGATTGTTCCCATTGGGATGTAGTGGATTCGCTCCCTTCTTATGGTAGAGGAACTGGGAGATATCGCAGTTTAATCTACGGACAGAATTTAAGTGATGTGGTAGTTACTGGTGATAATGGAACAATAGACGGGCAAGGTTCTATCTGGTGGAAGCTGTTCAGTTCTCATTCCTTAAACTACAGTCGACCAAATCTTATAGAATTTGTTGATTCGGTTGATGTCATAATTTCCAATTTGACTTTTGTGGACTATCCAGCTTGGGGCATCCATCCTGTATATTGCAGTAACGTTCAAATTCAGAACATTACTTCTCGTGCACCTGCCGAATCCCCTTACACAAGTGGCATAGTTCCAGATTCTTCTAAGTATGTTTGCATCGAGAACAGTAACATTAGCACTGGTCATGATGCAATTGTGTTGAAGAGTGGTTGGGATCAGTACGGAATTGCCTATGGAAAACCAACCTCGAGTGTCCACATCCGCAATGTTTACCTACAATCATCATCAGGTGCTGGCTTGGCTTTTGGGAGTGAGATGTCTGGGGGAATATCAGATGTTATTGCAGAAAAGCTTCACATACTTAACTCGTCTATAGGCATTGAACTGAAAACAACTAGGGGCAGAGGTGGCTATATGAAAGGCATCTTCATTTTTGATGCAGAATTGGAAAATATTCACTTGGGAATAAGCATGACAGGATACTCCGGTTTCCATCCAGACGACAAGTATGACAAAAGTGCACTTCCAGTTGTTGGTAGCATTACTTTCAAGAATGTGATGGGTGCAAATATTGATGTTGCTGGGAATTTTTCAGGAATATTTGAATCACCATTCTCAACAATCTGTCTTTCAAACGTGACTTTTTCTCTCAGTTATGAGCTATCCCCTTCGTGGTTCTGTTCTAATGTAATTGGTTTCTCCGAGGAGGTGATTCCTGAGCCATGCCCCGATCTCCAGAGCTCGTATTCCAAGTTCTCCTTTTCTTGCTTTGCTTCCCTATATCCACACCCTAGTAATATCTCCGGCTCTTTAGACCAAGTACTATAA 1554 0.4273 MSTKYFSSIIYEILVLSFYCSVFYVLHLSRSLSLAPCNSSCTGFRTLSPHKFQLTAAQADMKGLVAMLFLVAICAAVESNGEEKGGPCKQNALNARPHSVSILEFGAVGDGITLNTVAFQNAIFYLKSFADKGGAQLYVPSGTWLTGSFNLTSHLTLFLERGATIIASQDCSHWDVVDSLPSYGRGTGRYRSLIYGQNLSDVVVTGDNGTIDGQGSIWWKLFSSHSLNYSRPNLIEFVDSVDVIISNLTFVDYPAWGIHPVYCSNVQIQNITSRAPAESPYTSGIVPDSSKYVCIENSNISTGHDAIVLKSGWDQYGIAYGKPTSSVHIRNVYLQSSSGAGLAFGSEMSGGISDVIAEKLHILNSSIGIELKTTRGRGGYMKGIFIFDAELENIHLGISMTGYSGFHPDDKYDKSALPVVGSITFKNVMGANIDVAGNFSGIFESPFSTICLSNVTFSLSYELSPSWFCSNVIGFSEEVIPEPCPDLQSSYSKFSFSCFASLYPHPSNISGSLDQVL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02096 517 PANTHER PECTIN LYASE-RELATED 68 493 - -
Vimu6g02096 517 Gene3D - 87 473 IPR012334 -
Vimu6g02096 517 SUPERFAMILY Pectin lyase-like 89 487 IPR011050 -
Vimu6g02096 517 Pfam Glycosyl hydrolases family 28 172 472 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02096 Vimu-Chr6 18639623 18642539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02096 61 500 Glycoside Hydrolase AT3G16850 60.449 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02096 - - gmx:100787190 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02096 6 18639623 18642539 Vimu6g02096 6 18639623 18642539 ECH
Vimu6g02096 6 18639623 18642539 Vimu3g01806 3 32641157 32644615 PCT