Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01806 TACTTGGTTGGCATTATATACGAAATAGCACTTCTTCTCTTCCTCTTCTTCTGTCCCTATGTTCTTCTTCCTCCTCTAGTTCTACCCTCTTCTTCACTCCACACTCTTCTTCCCTCTCACCTTCCTTTTTCTCTTTCTTGGAGAGGGGAACAGACCCATGAAGAGGCTAGTAATGAATTGTGTCAACCCTTTGTTGTCCAGATCAATTCTCGAATCGAGAAGGATCTCGCCGAAGCGAATTTAGTGAATATTGGTCGAAGGCAAAATCTCTTGGAGAGGAAGCCCAAATGGAGTATCTATGTTGCACTTGAAGCTCTAGTTTTTGTAACTGTGCTTTTACTCATAGTATTAAGCACTGCTGTGGGAGGTCAAGATGATCATGGACCGTGTAAACAGAAAGTGTTGGATCCTAGGCCTCACAGTGTGTCAATCTTGGAGTTTGGGGCAGTTGGAGATGGAAAAACATTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCCGACAAAGGTGGTGCTCAACTATATGTTCCATCCGGCAAATGGCTTTCCGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAAAGAGGCGCAACCATCATTGCATCGCAGGATTATGCACACTGGCCTGCAGTGGATCCCCTACCCTCCTATGGTCGGGGAATTGATGTTCCAGGTGACAATGGAATTATTGATGGGCAGGGTTCTGTTTGGTGGGACCTAATCAGAACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTATTGGTTCTGATGATATCGTAATCTCAAATTTGACCCTTTTAAACTCTCCTGCCTGGAGCATTCATCCAGTGTATTGCAGCAATGTCCGAATCCAAAACATAACAGTTCATGCACCAACCGAGTTCCCTTACACAAGTGGTATAGTTCCAGATTCTTCCGAGCATGTTTGCATTGACAACAGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCTTATGGCAAACCAACCTCGAATGTCCACATCAGTGGTGTTTATCTGCAATCATCATCTGGTGCTGGCCTAGCATTTGGAAGCGAGATGTCTGGAGGCATCTCTGGTATAACAGCAGAGCATCTCCATATTATAAACTCGACCATTGGCATTGAACTGAAGACAACTAGGGGTCGAGGTGGTTATATGAGAAACATCTTCATTTCTGATACAAAATTGGAAAATATTTACTTGGGTATTAGCATGACAGGATTCTCTGGCTCCCATCCAGATGACAAGTATGATCCTAATGCAGTTCCGGTGGTTGGTAATGTTACTTTTGAGAATGTGATTGGTGCAAATGTTGCTATTGCTGGAAATTTTTCAGGAATAGTTGATTCACCCTTCACTCCTATTTTCCTTTCAAACGTGACTTTTTCTACCGGTTCCGAGTCATCTTCTTCATGGTTTTGTTCAAATGTAAAGGGAGTCTCTGAGGAGGTGTTTCCTGAGCCATGTCCTGACCTGCAGAACACACTGTCAAACTTTTCGTCTATTTTTTCTTCTCTACATCCATCGTACAGTTATGTCTCAAGCGCATGA 1617 0.4292 YLVGIIYEIALLLFLFFCPYVLLPPLVLPSSSLHTLLPSHLPFSLSWRGEQTHEEASNELCQPFVVQINSRIEKDLAEANLVNIGRRQNLLERKPKWSIYVALEALVFVTVLLLIVLSTAVGGQDDHGPCKQKVLDPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAQLYVPSGKWLSGSFNLTSHLTLFLERGATIIASQDYAHWPAVDPLPSYGRGIDVPGDNGIIDGQGSVWWDLIRTHSLNYSRPHIIELIGSDDIVISNLTLLNSPAWSIHPVYCSNVRIQNITVHAPTEFPYTSGIVPDSSEHVCIDNSNISTGHDAIVLKSGWDQYGVAYGKPTSNVHISGVYLQSSSGAGLAFGSEMSGGISGITAEHLHIINSTIGIELKTTRGRGGYMRNIFISDTKLENIYLGISMTGFSGSHPDDKYDPNAVPVVGNVTFENVIGANVAIAGNFSGIVDSPFTPIFLSNVTFSTGSESSSSWFCSNVKGVSEEVFPEPCPDLQNTLSNFSSIFSSLHPSYSYVSSA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01806 538 SUPERFAMILY Pectin lyase-like 131 527 IPR011050 -
Vimu3g01806 538 Gene3D - 130 506 IPR012334 -
Vimu3g01806 538 SMART pbh1 408 429 IPR006626 -
Vimu3g01806 538 SMART pbh1 317 338 IPR006626 -
Vimu3g01806 538 SMART pbh1 290 316 IPR006626 -
Vimu3g01806 538 SMART pbh1 379 400 IPR006626 -
Vimu3g01806 538 SMART pbh1 351 373 IPR006626 -
Vimu3g01806 538 PANTHER PECTIN LYASE-RELATED 117 518 - -
Vimu3g01806 538 Pfam Glycosyl hydrolases family 28 177 500 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01806 Vimu-Chr3 32641157 32644615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01806 101 526 Glycoside Hydrolase AT3G16850 55.605 1.33e-173 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01806 - - gmx:100801823 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01806 3 32641157 32644615 Vimu3g01806 3 32641157 32644615 ECH
Vimu6g02096 6 18639623 18642539 Vimu3g01806 3 32641157 32644615 PCT