Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02078 ATGGAAGGTATCTCAGGGGGGTTAAAGAAGTATTGGAGGAGAAGCATACGGGGATACCAAAGACTGCATGGGTGGGAAGGGCGTAAGAGAGAAACGGTTCAGCTTGGAGAGAACCGAAGAAGAAGGAGATGGCGCATAAAGATCAATCCCAAGATGAAAATCCGCAAAATCTCTTCCCCGAAGAAGTTGGTGCTGTGGGTCAGAGACGCCTACATGAGGATGATGCTGGGTCTCGCTAGCTCCACCGCTGCCTCTGCCGTCGGCTACGGCGCTGACTCTACCTCCACCAACGGTGGCTTCGGGAGGGGCCCACCGCCGAAGGAGTACGACCAGAAGATGATCGTTCATATGTACAAGTCCTTTATTATGGCACAGAGACAATTGCTGCCCCGAGATCCAACACCCAACCCTGTCACCACAATGCGAAGTGCAGTGGATTTGAGTGGTGGAAAGTGGAAAGTGGAAACCGCAATCGCCAAGCTGGAAAAAAAACACACTTTTTCCCTCTCCTTCTCTTATCGCCTCCTTTCCCTTCTTCCATTACCACTCACACATGGCCTCAACGACGACACAACCAGACCGATATTAGAAAGCGCCACCGTGCGCACATTCTCGGGGTTTTTCTCCGCCGCAATGTTCGTCATTGTTCTTATCATTCTCTCCCCCTCTTTCCAATCCGAAGCAATTCGATCCTCCCACCGATTTTCCTTCCGGAAGGCTCTCCCCTTCCGTAATGCACACGAATGCGCCTGGGTTTCCGCCCAAACAAAAGTGTGCGACCCTTCTTTAGTCCACGTCGCCATAACTCTCGACGTCGAATATCTCCGCGGTTCGATCGCCGCCGTGCACTCCATCCTCCGCCACGCCCTCTGTCCGGAGAACGTCTTCTTCCATTTTCTCGTCTCCGACACTAATCTTCAAGCCCTGGTGGAGTCCACCTTCCCCCACTTGAAGTTCAACGTCTATTACTTCGATCCTGACACCGTCTCTCACTTGATCTCCTCCTCCGTGCGCCAAGCGCTGGAGCAGCCGCTCAATTACGCCAGGAACTACCTCGCGGACCTTCTCGAGAGTTGCGTTGAGCGAGTTATCTACCTGGACTCCGATCTGGTGGTGGTGGACGACGTGGCCAAGCTTTGGAGCGCAAGTCTGGGCTCACGCGCCATCGGCGCGCCGGAGTACTGCCACGCTAACTTCACGAAGTACTTCACGGCGGGGTTCTGGTCGGAGCCGAGTTTGGCGGGGACGTTCTCGCAGCGGAGGGCGTGTTACTTCAACACGGGGGTGATGGTGATGGATCTGGTGAAGTGGAGGAAGGAGGGGTACACGAGAAAAATCGAGAGGTGGATGGAGATTCAGAAGAGTGATCGGATCTACGAGCTGGGTTCGTTGCCGCCGTTTTTGCTGGTGTTCGCGGGACATGTGGCACCCATTGAGCACCGATGGAACCAGCACGGTTTGGGAGGGGATAACGTGAAGGGTAGTTGTCGTGGGTTGCACCCTGGTCCGGTTAGCTTGTTGCATTGGTCCGGTAGTGGAAAACCCTGGCTCCGTTTACACTCCAAACGTCCTTGCCCTCTCGACTCTCTGTGGGCTCCCTTTGACTTTGGTTTGCATTTTATTCGGTTAACTTTTATATGTGATGGGGGAGAGGGAGAGTTTGCTGCTGCTGTAGAACAATCCAAGGAGAGGCTCTGCCTTTGGATTGTGTTGGCAGCTAGGCTAAGGGAACCATGCTTCGGTGGCAGTGGCGGAACATTTTTAGCTATCTTTCAACCTTTGCGTATCATTGTTGCTGTTAAGTGTTTCCTCACTGTCACTGAGATGTTTGGGGTCCAATCCCATTAA 1848 0.5352 MEGISGGLKKYWRRSIRGYQRLHGWEGRKRETVQLGENRRRRRWRIKINPKMKIRKISSPKKLVLWVRDAYMRMMLGLASSTAASAVGYGADSTSTNGGFGRGPPPKEYDQKMIVHMYKSFIMAQRQLLPRDPTPNPVTTMRSAVDLSGGKWKVETAIAKLEKKHTFSLSFSYRLLSLLPLPLTHGLNDDTTRPILESATVRTFSGFFSAAMFVIVLIILSPSFQSEAIRSSHRFSFRKALPFRNAHECAWVSAQTKVCDPSLVHVAITLDVEYLRGSIAAVHSILRHALCPENVFFHFLVSDTNLQALVESTFPHLKFNVYYFDPDTVSHLISSSVRQALEQPLNYARNYLADLLESCVERVIYLDSDLVVVDDVAKLWSASLGSRAIGAPEYCHANFTKYFTAGFWSEPSLAGTFSQRRACYFNTGVMVMDLVKWRKEGYTRKIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVKGSCRGLHPGPVSLLHWSGSGKPWLRLHSKRPCPLDSLWAPFDFGLHFIRLTFICDGGEGEFAAAVEQSKERLCLWIVLAARLREPCFGGSGGTFLAIFQPLRIIVAVKCFLTVTEMFGVQSH 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02078 615 Pfam Glycosyl transferase family 8 265 518 IPR002495 GO:0016757
Vimu6g02078 615 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 210 535 - -
Vimu6g02078 615 SUPERFAMILY Nucleotide-diphospho-sugar transferases 264 536 IPR029044 -
Vimu6g02078 615 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 265 525 IPR029044 -
Vimu6g02078 615 FunFam Hexosyltransferase 265 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02078 Vimu-Chr6 18527457 18533278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02078 201 542 Glycosyltransferase AT3G62660 72.022 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02078 - - gmx:100805221 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02078 6 18527457 18533278 Vimu6g02078 6 18527457 18533278 ECH
Vimu6g02078 6 18527457 18533278 Vimu3g01811 3 32726745 32731123 PCT