Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02067 ATGGCCATCACTACTCACACTCTATCCTCCATTGAAAAAAGACATTGGTGGCTTACCAATCGAAAGATTGTTGAGAAATACATCAAAGACGCTCGGAGTCTTATAGCCACGCAAGATCAGAGGGAGATTGCTTCGGCTCTCAACCTTCTCGATGCGGCTCTGGCGATTTCTCCCAGGCTGGACCAAGCGCTTGAGCTTAGAGCCAGGGCTCTCCTCTGTTTGCGGCGCTTCAAGGAGGTCGCCGATATGCTTCAGGACTACATTCCGAGCCTCCGAATCAACGACGACTCCTCTTCTTCCTCCTCCTCTGTTTCATCCGACACCTCGAGAGAGGGAGTGAAGCTTCTCTCTTCCTGTGAGTCGCCGGTGCGAGATCAGAGCTTCAAGTGTTTTTCTGTTTCCGACCTTAAGAAGAAGGTCATGGCAGGGCTGTGTAAAAACGGCGAGAAGGATGGGCAATGGAGATACTTGGTGTTGGGTGAAGCATGCTGCCACCTAGGCCTAATGGAGGATGCAATGGTTCTTCTTCAAACGGGAAAGCGTCTTGCAAGCGCTACACTCCGGCGCGAGAGTGTGTGCTGGTCGCAAGACAGCTTCAATGTTACGAACATCCAATTCTCCAGTGACGCCGCAAATGCGCCACCCACAACTCCACCGCGAACTCTTCTTGCGGCGGATTCCGAGAGCGTGACCCAACTCCTCGGCCACATAAAGTTCCTGCTCCGGCGACGCGCCGCCGCATTGGCCGCCCTCGATGCCGGGCTCTACTCAGAGGCCATCCGCCACTTCTCAAAAATTGTGGACGGCCGGCGTAGCGCACCGCAGAGCTTCCTTGTCGAATGCTATCTCCTCCGTGCCTCCGCTCACCGTTCCGCCGGTAGAATCGCAGAGTCAATTGCCGATTGTAACCGCACCCTTGCTCTGGACCCCACTTGCATTCAAGCACTAGAAACCAGAGCTTCACTCTTCGAAAGCATTCGTTGTTTACCCGATTCTCTTCACGATCTCGAACACTTGAAGCTCCTCTACAATTCAATTTTACGAGACCGCAAGCTTCCCGGTCCTGCGTGGAAGCGCCACAACGTGCGTTATAGGGAAATTCCAGGGAAACTCTGTACCCTCACTATTAAAATTCAAGAACTGAAACAGAAGCTGGCATCTCGAGAAACAGGGAATGTCGATTATTATGCTTTGATTGGTGTTCGACGAGGTTGTTCCCGGTCGGAGTTGGAAAGGGCTCACTTGTTGCTTTCCTTGCGGCACAAGCCTGATAAGGCAACGGGGTTCATCGAAAGGTGCGAGCTTGCGGATGAGCGTGATGTTGAGTCGGTTAATGAGAGGGCGAAGATGTCGTCTTTGTTGTTGTATAGATTGGTTCAGAAGGGTTACACTGCTGTGATGAGTAACATCATGGATGAGGAAGCTGCTGAGAAACAGAGAAAGAAGGCTGCTTTGCTGGCTATGCAAGTGCAGAAAGAGAAAGCCGATGAACCTGAGTTGTTGAGCAAAGTTGAGTGTACCAGGAGCAGCGTGGAAAATAATAATAATAATGATAATAATAATAATAATAATAATAATAATAATAATAAAAACGATAATAATAATAATAATAATAATAATAATAATAATAATACTGCTCAAATGTCTCAAAATAGGTCCATGGTGTGTTCTTCTACCGCGAATCCTGCGATGTTTCAGGGCGTTTTCTGCCGTGACATTGCAGTGGTGGGGAACTTGCTTTCTCAGGTGGGGTTTAATCGGTCCATGCCGGTGAAGTATGAAGCGTTGAGCTGTTGA 1797 0.4919 MAITTHTLSSIEKRHWWLTNRKIVEKYIKDARSLIATQDQREIASALNLLDAALAISPRLDQALELRARALLCLRRFKEVADMLQDYIPSLRINDDSSSSSSSVSSDTSREGVKLLSSCESPVRDQSFKCFSVSDLKKKVMAGLCKNGEKDGQWRYLVLGEACCHLGLMEDAMVLLQTGKRLASATLRRESVCWSQDSFNVTNIQFSSDAANAPPTTPPRTLLAADSESVTQLLGHIKFLLRRRAAALAALDAGLYSEAIRHFSKIVDGRRSAPQSFLVECYLLRASAHRSAGRIAESIADCNRTLALDPTCIQALETRASLFESIRCLPDSLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGKLCTLTIKIQELKQKLASRETGNVDYYALIGVRRGCSRSELERAHLLLSLRHKPDKATGFIERCELADERDVESVNERAKMSSLLLYRLVQKGYTAVMSNIMDEEAAEKQRKKAALLAMQVQKEKADEPELLSKVECTRSSVENNNNNDNNNNNNNNNNNKNDNNNNNNNNNNNNTAQMSQNRSMVCSSTANPAMFQGVFCRDIAVVGNLLSQVGFNRSMPVKYEALSC 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02067 598 Pfam Tetratricopeptide repeat 245 310 - -
Vimu6g02067 598 SMART tpr_5 279 312 IPR019734 GO:0005515
Vimu6g02067 598 SUPERFAMILY Chaperone J-domain 388 428 IPR036869 -
Vimu6g02067 598 SUPERFAMILY TPR-like 245 340 IPR011990 GO:0005515
Vimu6g02067 598 CDD DnaJ 394 428 IPR001623 -
Vimu6g02067 598 Gene3D DnaJ domain 377 537 IPR036869 -
Vimu6g02067 598 PANTHER OS01G0273500 PROTEIN 9 598 - -
Vimu6g02067 598 MobiDBLite consensus disorder prediction 510 554 - -
Vimu6g02067 598 Gene3D Tetratricopeptide repeat domain 31 348 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02067 Vimu-Chr6 18467544 18470372 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02067 - - vra:106757864 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02067 6 18467544 18470372 Vimu6g02067 6 18467544 18470372 ECH
Vimu6g02067 6 18467544 18470372 Vimu3g01838 3 33101923 33104545 PCT