Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01838 ATGGCCGTGACCACTCCCTATCTCAATGCAACAGAAAAAAAGCACTGGTGGCTCACCAACCGTAAGGTTGTTGAGAAATACATCAGAGACGCTCGCACTCTGATGGCCACGCAGGAACAGAGCGAGATCGCTTCGGCGCTCAACCTTCTCGACGCGGCTCTGGCGATCTATCCGCGGCTCGACGAAGCGCTGGAGCTGCGAGCGAGGTCTCTGCTCTGTCTGCGGAGGTTCAAAGAGGTAGCGGATATGCTTCAAGACTACATCCCGAGCCTGAAAATGGCGAACGATGAGTCGGTTTCTTCGGATAGTTCTTCACAACAACTTTCTAGGGAGGGCGCGAAGCTCCTCTCCTCTGATACCTCGGGTTCGGATCAGAGCTTCAAGTGCTTCTCTGTCTCTGACTTGAAGAAGAAGGTTATGGCAGGGCTGTGTAAAAGTTGCGACAAGGAAGGGTATTGGAGATACTTGGTTCTGGGGAAAGCATGCTGCCACCTAGGCCTAATGGAAGACGCAATGGTTCTTCTCCAAACGGGGAAACGCCTCGCCTCCGCCGCGTTCCGCCGCGAGAGCGTGTGCTGGTCCGACGATAGCTTCTCCCTCTCGAATCCCCTCTTCTCCGGCGACTCAAGCCCACCCCGGGTCCCACTTCCGGAGTCCGAAGCAGTGACCCAACTCCTCGCCCACATAAAGCTCCTCCTCCGGCGCCGTGCCGCCGCGCTCGCTGCCCTGGAAGCCGGCCTCCACTCCGAGGCCATCCGCCACTTCTCCAAAATCGTGGACGGGCGACGCGGTGCCCCGCAGGCCTTCCTCGCCGAGTGCTACATGCACAGGGCCTCCGCTCACCGGTCCGCAGGCCGAATCGCCGATTCTATTGCCGATTGCAACAGAACCCTCGCCTTGGACCCAACCTGCATCCAAGCACTTGAAACTCGAGCCTCTCTTCTGGAATCCATTCGTTGCTTCCCAGATTCACTCCATGACCTCGAACATCTCAAACTCCTCTACAACACCATCTTGCGCGACCGCAAACTCGCCGGTCCTGCCTGGAAGCGCCAAAACGTGCGCGCCAGAGAAATTCCTGGGAAACTCTGCGCCCTCACCACGAAGATCCAGGAACTGAAACAGAGGGTAGCTTCGGGAGATACCTCCAACGTGGACTACCATGGTCTCATCGGCTTGCGGCGCGGCTGTGGTCGTTCGGAGTTACAGAGAGCGCATTTGCTTCTGTCTCTGAAACACAAGCCCGACAAGGCAATGTGCTTCATCGAGCGGTGCGAGCTGGCGGACGAGCGGGACCTCGATTCTGTTAAGGAGAGGGCGAGAATGTCGTCGCTCTTGCTCTACCGGCTTCTCCAGAAGGGTTACACCAACGTGATGGGTGCCATAATGGACGAAGAGGCTGCTGAGAAGCAAAGGAAGAAAAAGGTTATGGAAGCTCAGGCCAAAGTCGAGAAATTGGAAAACAAAAAGTGCACTGTATCGTCTCCTTCCACCGCCAATCCCGCGGTTTTTCAGGGAGTCTTTTGCCGCGATCTTGCGGTGGTTGGAAACTTGCTCTCGCAAACGGGATTCAACCGTTCCATTCCAGTCAAGTACGAGGCGTTGAGCTGCTGA 1614 0.5663 MAVTTPYLNATEKKHWWLTNRKVVEKYIRDARTLMATQEQSEIASALNLLDAALAIYPRLDEALELRARSLLCLRRFKEVADMLQDYIPSLKMANDESVSSDSSSQQLSREGAKLLSSDTSGSDQSFKCFSVSDLKKKVMAGLCKSCDKEGYWRYLVLGKACCHLGLMEDAMVLLQTGKRLASAAFRRESVCWSDDSFSLSNPLFSGDSSPPRVPLPESEAVTQLLAHIKLLLRRRAAALAALEAGLHSEAIRHFSKIVDGRRGAPQAFLAECYMHRASAHRSAGRIADSIADCNRTLALDPTCIQALETRASLLESIRCFPDSLHDLEHLKLLYNTILRDRKLAGPAWKRQNVRAREIPGKLCALTTKIQELKQRVASGDTSNVDYHGLIGLRRGCGRSELQRAHLLLSLKHKPDKAMCFIERCELADERDLDSVKERARMSSLLLYRLLQKGYTNVMGAIMDEEAAEKQRKKKVMEAQAKVEKLENKKCTVSSPSTANPAVFQGVFCRDLAVVGNLLSQTGFNRSIPVKYEALSC 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01838 537 Coils Coil 469 489 - -
Vimu3g01838 537 SMART tpr_5 152 185 IPR019734 GO:0005515
Vimu3g01838 537 SMART tpr_5 271 304 IPR019734 GO:0005515
Vimu3g01838 537 SUPERFAMILY TPR-like 237 333 IPR011990 GO:0005515
Vimu3g01838 537 Gene3D Tetratricopeptide repeat domain 12 497 IPR011990 GO:0005515
Vimu3g01838 537 PANTHER OS01G0273500 PROTEIN 9 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01838 Vimu-Chr3 33101923 33104545 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01838 - - gmx:106797171 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01838 3 33101923 33104545 Vimu3g01838 3 33101923 33104545 ECH
Vimu6g02067 6 18467544 18470372 Vimu3g01838 3 33101923 33104545 PCT