Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02066 ATGTCTTCAACCTTCTCACCCCTCGTTGCCGTCTTCTTCCTCCTTTTTCTGCTCCACTACACGTGCCAGGCACGTGAAGCATTCGCCTGTGACCCTAAAAATGCTGCCACCAAGAACTTGCCGTTTTGCAAGGTCTCAGTGGCGATACCGGAGAGGGTGAAGGACCTCGTCGGAAGGTTGACGCTTGAGGAGAAGGTCAGGCTTCTGGTGAACAATGCCGCGGCGGTTCCGCGGCTGGGGATGAAAGGGTACGAGTGGTGGTCGGAGGCACTGCACGGCGTTTCAAATGTGGGTCCCGGAGTGAAGTTTAATGCAGAATTCCCCGGCGCGACTAGCTTCCCCCAAGTCATCACCACCGCTGCTTCCTTCAACGCTTCACTCTGGGAGTCAATCGGACGGCCACTTGCAGCTAATAATGGGTGTTCGAAATATGAGGATGAGGAAGAAAGAAAGATAAAAAGAAAAAGAAAAAGAGTTGTATCCGACGAGGCAAGGGCAATGTACAACGGTGGAAAAGCAGGTCTCACCTATTGGAGTCCAAACGTGAACATTTTCAGGGACCCAAGGTGGGGCCGCGGACAGGAAACTCCAGGTGAGGACCCTGTGCTAGCCGGTATGTATGCTGCTAGTTACGTTAGAGGACTGCAGGGAACCCACCCTAGCCGGTTGAAGGTTGCTGCTTGTTGCAAACACTTTACGGCTTATGACCTGGATAATTGGAACGGCATGGATCGATTCCACTTTAATGCACAGGTAAGTAAGCAGGACATAGAGGATACATTCGACGTGCCATTCAGGATGTGTGTTAGCGAAGGGAAAGTAGCGAGTGTGATGTGTTCTTACAATCAAGTGAATGGGGTTCCCACTTGTGCGGACCCCAACCTCCTCAAGAAAACAGTTCGTGGCCTGTGGCAACTTGACGGCTACATTGTATCAGACTGTGACTCTGTTGGGGTGTTTTATAGTAATCAACATTATGCACCCACCCCCGAAGAAGCTGCCGCTGATGCCATTAAAGCAGGTTTGGATTTAGATTGTGGTCCCTTCTTGGCCGTGCACACGCAGGATGCTGTCAAAAAAGGCTTGCTGAGCCTAGCTGACGTGGACGGGGCCCTGGTGAATACACTGACTGTCCAAATGAGGTTAGGTATGTTTGATGGTGAGCCATCGGCCCAACAATATGGCAAATTGGGCCCAAACGACGTGTGCAAACCGGCCCATCAACAGCTGGCTCTTGAAGCTGCAACACAAGGAATTGTCCTTCTTAAGAACATCGGTCCTGTTTTGCCTCTCTCCCAACAGCGTCATCGTACCGTGGCTGTCATTGGGCCCAATTCCAAGGCCACTGTTACAATGATTGGAAACTATGCTGGTAAAGTCCATTCCGATCCGTATCTCATGAATGCTCTCATTGCCTATCTGATAGGTATTGCTTGTGGATACACCAGCCCCTTACAAGGAATAGGAAGATACGCCACGACTCATCATCAGTTGGGTTGTGAAAATGTAGCTTGTAAGAATGATAAACTTTTTGGGCCCGCCATAAACGCAGCCCGTCAAGCGGATGCGACCGTTCTGGTTATGGGCTTGGACCAGTCCATCGAAGCTGAAACAGTGGACAGGACCGGCTTGCTTTTGCCTGGGCGTCAACAGGACCTTGTTTCAAAAGTTGCAGCTGCCTCGAAGGGACCGACCATTCTGGTCCTAATGTCTGGTGGGCCTGTTGACATCACTTTTGCGAAGAATAACCCTCGGATCGTGGGCATCCTCTGGGCCGGTTATCCGGGCCAAGCCGGTGGTGCCGCCATTGCAGATATACTGTTTGGAACTTCTAGCCCAGGGGGAAAGCTTCCAATGACATGGTACCCAGAAGAATACCTGAGAAAGTTGCCGATGACGAAGATGGCAATGCGAGGAAGTGAATCGGCAGGGTACCCAGGAAGAACGTATAGATTCTACAAGGGTGAAGTGGTGTATCCGTTTGGGCACGGGTTAACTTACACTCACTTTGTCCACACACTGGCAAGTGCTCCCACAGTGGTGTCAGTTCCCGTGAACGGTCACCGGCGTTCGAATGCCAGCGACATTTCGAACAGAGCCATTAGAGTGACTCATGCGCGGTGTGACAACCTCTTCATCACCCTACAGGTGGACATTAAAAACGTGGGGTCCAGAGATGGGACGCACACGTTGGTAGTGTTCTCTGCTCCACCTCCCGCTGCCGGGCATTGGGCACTGGAGAAGCAGCTTGTGGCCTTCCAGAAAGTCCATGTTCCTGCCAAGGCTCAACACAGAGTCGGAGTTCATATTCACGTCTGCAAACTCCTGAGTATAGTGGATAAGTCTGGGATCAGGAGAATCCCGTTGGGGTTACACAGTTTTAACATCGGCGACGTTAAACATTCCGTCTCACTTCAAGCTGCAGCACTTGGGATTATCAAGTCCTGA 2448 0.5135 MSSTFSPLVAVFFLLFLLHYTCQAREAFACDPKNAATKNLPFCKVSVAIPERVKDLVGRLTLEEKVRLLVNNAAAVPRLGMKGYEWWSEALHGVSNVGPGVKFNAEFPGATSFPQVITTAASFNASLWESIGRPLAANNGCSKYEDEEERKIKRKRKRVVSDEARAMYNGGKAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGMYAASYVRGLQGTHPSRLKVAACCKHFTAYDLDNWNGMDRFHFNAQVSKQDIEDTFDVPFRMCVSEGKVASVMCSYNQVNGVPTCADPNLLKKTVRGLWQLDGYIVSDCDSVGVFYSNQHYAPTPEEAAADAIKAGLDLDCGPFLAVHTQDAVKKGLLSLADVDGALVNTLTVQMRLGMFDGEPSAQQYGKLGPNDVCKPAHQQLALEAATQGIVLLKNIGPVLPLSQQRHRTVAVIGPNSKATVTMIGNYAGKVHSDPYLMNALIAYLIGIACGYTSPLQGIGRYATTHHQLGCENVACKNDKLFGPAINAARQADATVLVMGLDQSIEAETVDRTGLLLPGRQQDLVSKVAAASKGPTILVLMSGGPVDITFAKNNPRIVGILWAGYPGQAGGAAIADILFGTSSPGGKLPMTWYPEEYLRKLPMTKMAMRGSESAGYPGRTYRFYKGEVVYPFGHGLTYTHFVHTLASAPTVVSVPVNGHRRSNASDISNRAIRVTHARCDNLFITLQVDIKNVGSRDGTHTLVVFSAPPPAAGHWALEKQLVAFQKVHVPAKAQHRVGVHIHVCKLLSIVDKSGIRRIPLGLHSFNIGDVKHSVSLQAAALGIIKS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02066 815 SUPERFAMILY (Trans)glycosidases 40 418 IPR017853 -
Vimu6g02066 815 SMART Fn3_like_2 729 800 IPR026891 -
Vimu6g02066 815 Pfam Glycosyl hydrolase family 3 C-terminal domain 419 667 IPR002772 GO:0004553|GO:0005975
Vimu6g02066 815 Gene3D Immunoglobulins 691 811 IPR013783 -
Vimu6g02066 815 Pfam Glycosyl hydrolase family 3 N terminal domain 177 373 IPR001764 GO:0004553|GO:0005975
Vimu6g02066 815 Gene3D - 404 668 IPR036881 GO:0004553|GO:0005975
Vimu6g02066 815 PANTHER SUGAR HYDROLASE-RELATED 20 803 IPR044993 GO:0009044|GO:0045493
Vimu6g02066 815 Gene3D - 52 396 IPR036962 GO:0004553|GO:0005975
Vimu6g02066 815 FunFam probable beta-D-xylosidase 2 462 668 - -
Vimu6g02066 815 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 419 670 IPR036881 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02066 Vimu-Chr6 18455047 18459418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02066 9 815 Glycoside Hydrolase AT1G02640 68.525 0.0 1129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02066 - - gmx:100789316 1393.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02066 6 18455047 18459418 Vimu6g02066 6 18455047 18459418 ECH
Vimu6g02066 6 18455047 18459418 Vimu3g01839 3 33119496 33123825 PCT