Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01839 ATGATGTTCCCTTACATATATATATATATATATAAACATTGTTCCACCCCTTCCATAACTTCTCAAGCCACCACGCCTTTCACTTTTTATTTCGCTATAATGGCTTCAATCTTTTCACCTCTCACCACTATCTTCTTCTTCCTCATAGTGCTCTGGGGTGGTGAGGCTCGTGACCCTTTTGCGTGTGACCCAAAGAACGCCGCCACAAGGGGCTTACCCTTTTGCAAGACGTCGCTGGCTATAGCAGAAAGGGTGAAGGACCTGATTGGAAGGTTGACAGTGGAAGAAAAAGTGAGCTTGCTGGTGAACAATGCGGCGGCAGTTCCACGGCTTGGAATCAAAGGCTATGAGTGGTGGTCGGAGGCACTGCATGGGGTCTCAAATGTGGGCCCCGGAACCAAGTTTGGCGGCCAGTTTCCCGCCGCCACCAGCTTCCCTCAAGTCATCACCACCGCTGCTTCTTTCAACGCTTCTTTGTGGGAAGCTATTGGACAGGCGGCGTCCGACGAAGCAAGAGCAATGTACAACGGAGGAACGGGTGGGCTTACGTACTGGAGCCCAAACGTGAACATTTTTAGAGACCCAAGGTGGGGCCGGGGACAGGAGACTCCCGGTGAAGACCCATTAGTAGCCGGTAAGTATGCGGCCAGTTACGTGAGGGGATTACAGGGGAGCGACGGTGACCGGTTGAAGGTGGCTGCCTGTTGCAAACACTTTACGGCTTATGACCTTGATAATTGGAACGGTGTGGATCGATTTCACTTCAATGCAGAGGTTAGCAAGCAGGATATGGAGGAGACGTTCAACGTGCCATTCAGGATGTGCGTTAAGGAAGGAAACGTGGCGAGTGTGATGTGTTCTTACAATCAGGTTAACGGTGTTCCCACCTGTGCCGACCCCGTTCTCCTAAACACTACCGTTCGAGGCCTCTGGGGTCTTAATGGCTACATCGTATCAGACTGTGACTCTGTCGGGGTCTTCTACAATAGCCAACATTACACGTCAACGCCAGAAGAAGCTGCTGCCGATGCCATTAAAGCAGGTTTGGATTTGGATTGTGGGCCTTTTCTAGCCCAGCACACCAACAATGCCGTCAAAAAAGGCCTGTTAAGTGAAGCTGATGTGAATGGGGCCTTGGCGAACACATTGACGGTCCAAATGAGGTTAGGGATGTACGATGGTGAGCCCTCAGGTCATCCGTATGGGAATCTTGGCCCAAGAGATGTGTGCAGCCCAAGTCACCAACACCTTGCCCTTGAAGCCGCCACACAAGGAATCGTGCTACTTAAAAACAAAGGCCCTTCTTTGCCTCTCTCCACAAGGACTTATCGCACCCTGGCTGTTATTGGGCCCAATTCTAATGCCACTGTCACAATGATTGGAAACTATGCAGGTATTGCTTGCGGATACACCAGCCCTTTGCAGGGAATAGGGAAATATGCCAAGACTATTATTCACGAGATGGGTTGTGCAAATGTGGCCTGCAGAGACAACAAGCAATTCCGGAGAGCTATAAATGCAGCCCAACAAGCGGATGCAACTGTGCTGGTGATGGGCCTGGACCAGTCCATCGAGGCTGAAACTGTGGACAGGGCTGGCCTGCTTCTTCCCGGTCACCAACAAGACCTTGTGTCCAAAGTTGCATCTGCCTCCAAGGGCCCAACGATTTTGGTCATAATGTCTGGTGGGCCTGTGGATATAAGTTTCGCAAAGAATGACCCAAGAATCGAAGGAATTTTGTGGGCCGGTTATCCGGGTGAAGCTGGTGGTGCTGCCATTGCAGATATCTTGTTTGGAACATCTAACCCTGGAGGGAAAGTACCGATGACATGGTACCCAGAAGGGTACGTTGAAAAGTTGGCAATGACAAATATGGCAATGCGATCAAGGAAATCGAAAGGGTACCCGGGAAGAACGTACAGATTTTACAGTGGGCCGGTGGTGTATCCATTTGGTTACGGATTGTCTTACACGAATTTTGTTGAAACATTGGCAAGTGCACCCAAAGTGGTATCAATTCCCGTGGATGGGCACCGCCACAAGAATACCTCCAACATTGCTAACAAGGCAATTAAAGTCACACATGCACGATGTGCCAAGCTTTCTGTTAGCCTTCACGTGGACGTTAAAAATGTTGGCTCCAGATATGGCACCCACACGTTGTTAGTCTTCTCCGCACCACCTCCTGGTAAAGCCCACTGGGCTCCACATAAGCAACTTGTGGCCTTCCACAAAGTCCATCTTCCCCCCAAGGCCCAACAACGACTTCAGATCAACATTCACGTTTGCAAGCTCCTCAGCGTCGTTGACACCTCCGGCACTAGGAGAATCCCAATGGGCTCTCACACTCTTCACATCGCTCATCTTAAACACTCTCTCACACTTCACCCACTAATTCTTTGA 2403 0.5023 MMFPYIYIYIYKHCSTPSITSQATTPFTFYFAIMASIFSPLTTIFFFLIVLWGGEARDPFACDPKNAATRGLPFCKTSLAIAERVKDLIGRLTVEEKVSLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTAASFNASLWEAIGQAASDEARAMYNGGTGGLTYWSPNVNIFRDPRWGRGQETPGEDPLVAGKYAASYVRGLQGSDGDRLKVAACCKHFTAYDLDNWNGVDRFHFNAEVSKQDMEETFNVPFRMCVKEGNVASVMCSYNQVNGVPTCADPVLLNTTVRGLWGLNGYIVSDCDSVGVFYNSQHYTSTPEEAAADAIKAGLDLDCGPFLAQHTNNAVKKGLLSEADVNGALANTLTVQMRLGMYDGEPSGHPYGNLGPRDVCSPSHQHLALEAATQGIVLLKNKGPSLPLSTRTYRTLAVIGPNSNATVTMIGNYAGIACGYTSPLQGIGKYAKTIIHEMGCANVACRDNKQFRRAINAAQQADATVLVMGLDQSIEAETVDRAGLLLPGHQQDLVSKVASASKGPTILVIMSGGPVDISFAKNDPRIEGILWAGYPGEAGGAAIADILFGTSNPGGKVPMTWYPEGYVEKLAMTNMAMRSRKSKGYPGRTYRFYSGPVVYPFGYGLSYTNFVETLASAPKVVSIPVDGHRHKNTSNIANKAIKVTHARCAKLSVSLHVDVKNVGSRYGTHTLLVFSAPPPGKAHWAPHKQLVAFHKVHLPPKAQQRLQINIHVCKLLSVVDTSGTRRIPMGSHTLHIAHLKHSLTLHPLIL 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01839 800 FunFam probable beta-D-xylosidase 2 411 658 - -
Vimu3g01839 800 Pfam Glycosyl hydrolase family 3 C-terminal domain 426 657 IPR002772 GO:0004553|GO:0005975
Vimu3g01839 800 Pfam Glycosyl hydrolase family 3 N terminal domain 138 382 IPR001764 GO:0004553|GO:0005975
Vimu3g01839 800 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 426 660 IPR036881 GO:0004553|GO:0005975
Vimu3g01839 800 SUPERFAMILY (Trans)glycosidases 72 425 IPR017853 -
Vimu3g01839 800 Gene3D Immunoglobulins 681 797 IPR013783 -
Vimu3g01839 800 Pfam Fibronectin type III-like domain 721 787 IPR026891 -
Vimu3g01839 800 Gene3D - 84 398 IPR036962 GO:0004553|GO:0005975
Vimu3g01839 800 PRINTS Glycosyl hydrolase family 3 signature 145 164 IPR001764 GO:0004553|GO:0005975
Vimu3g01839 800 PRINTS Glycosyl hydrolase family 3 signature 306 324 IPR001764 GO:0004553|GO:0005975
Vimu3g01839 800 PRINTS Glycosyl hydrolase family 3 signature 232 248 IPR001764 GO:0004553|GO:0005975
Vimu3g01839 800 PANTHER SUGAR HYDROLASE-RELATED 49 790 IPR044993 GO:0009044|GO:0045493
Vimu3g01839 800 SMART Fn3_like_2 719 790 IPR026891 -
Vimu3g01839 800 Gene3D - 412 658 IPR036881 GO:0004553|GO:0005975
Vimu3g01839 800 FunFam probable beta-D-xylosidase 7 84 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01839 Vimu-Chr3 33119496 33123825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01839 41 796 Glycoside Hydrolase AT1G02640 71.372 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01839 - - gmx:100798630 1373.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01839 3 33119496 33123825 Vimu3g01839 3 33119496 33123825 ECH
Vimu6g02066 6 18455047 18459418 Vimu3g01839 3 33119496 33123825 PCT