Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02060 ATGAGAGCCTTATTGCTTGCGCATGCAATGACGACACCTTTGTTCCACCGTAAAATCCTGTGCAACTTTTACCTCTTCTGCTTGTTGCGGCATCCTCTTAGCCTTGATACACCATCTGCTATCGTTCGCGTGGAGTGTGCTAGTTGGGTAGCAGTTCTTCATGTTTCAAACTTTTCTGGCGTCCAGGGGGTGCGTGAACCGCAATGGACGCTAGCCGCATTACGAATGACAGATGGAGTCGCGCCACAGCTTGATCAACGACATAAGGCAACCGCCGGTGAATATGCGGTTGGTTTAGTTTTGGAGCATACATTGGATGCAAATTATGCAAGGAACAGCTATTCCGATGAAGACGACAACGTTTCATTCGTCCTTCCCGTATTAATTTCAAAGATTGAAGGAGTTTCACTGTCTCACTCCGATTCTACCAATAAGGTGCAAAAAGAAGACATGGACATCGATGATACACTATTGGACGAGAAAGCAAGAAGAACGAGAGATCTGCTCGCCAGTTTCTACTCTCCAATCCCTTCAGCGTCCTCCAACAATCCTTTTTCCAAACACATCTCACCCGATGACATCAATTCCTCTTCCTTCCAACCTGATCAGTACATGAAAATCATGGCGCGAAAGAGCAATTTGGAAGGTCTACTCCAGAAGCACGTTGAAATGGTAGCTGAAATAAAGAATCTAGACACTGACTTGCAAATGCTCGTCTACGAGAATTATAATAAGTTTATCTGCGCTACAGATACTATAAAGAGGATGAAGAGTAATATTTTAGGGATGGAGGAAAATATGGAACAGCTTCTTGAGAAGATAATGTCTGTACAATCAAGGAGTGATAGCGTTAACACTTCTCTGTGCGAAAATAGGGAGCATATAGAGAAAATGCATCGGACATGCAATCTTCTTCGTAAAGTTCAGTTCATATATGACCTACCTGATAGATTAGGCAAGTGCATCAAGTCTGAGGCCTATGCAGATGCAGTCAGGTTCTACATCGGTTCAATGCCAATTTTTAAGGCCTATGGAGATTCATCATTCCAAGATTGTAAGCGAGCATCTGAAGAAGCAATAGCTATCATAGTAAAAAATTTGCAGGGAAAAGTATTTTCAGATTCTGAATCAATGCAAGTGAGAGCCGAGGCTGCAGTTCTCTTGAAACAGTTGAATTTTCCTGTGGACTATTTGAAGACAAAGCTACTAGAGAAGTTGGAGCTTTCGCTTACAGACGTGCAGATTATCCCTGAAGTAATGAAGAATGAGTATCCCTCTGTTCACGAGGCAGCCATTAACGAGTTCGTGGAGGCCCTTCGTGCATTTCGAGTAATATTTCCAGATTCAGAAAAGCAATTAGTTAAACTTGCTCAAGACCTGCTGACCAAGTTAGGATCTTTACCTTACAATGCAAAGTACTTTGTAATTATAGAAGCGTATGTGATGACACGGATTTGTTCGGAAGATCTACTTGGCGTTCTTAGAGTTATCTGGAATGACGTGCTCCGATTGGTTGAAGTCTTAGAGGATATATCTCTCTCAAATAATTCCCTCGAGGCTACCAAGAATGCTGTCAAGCTGTACATTAGAAGTGCATTTTTTCATCTAATGCAAGACATCTCAGATCACCTCTTAAAAGTGCTGAAACGGGGTGGAGCAGAGGAGTACTCATTGGAAGTTGCCTTAGATGCTAGCATCAAAGCAGTTTACGACGGAGGCAGGAACGTTTTGCTGGATATCCACAAAATTCTAGATGACAACTTAGAGATTGTAGATAAACTAAGAGAGTTAATAATTGATTGGGTTCAACAAGGATATCAAAATTTTTTTAGGGAACTTGAGGTTCAGTTCCTTTCGTTTTTAGGAAGAAACAATTCTTCAGCTACTCAAAGTCATGGTTTGGAGGGAGCTCAAGGTGACAAAGCCTTTCCTCGCCTTGCTCTGGATTTAGCAGCTTCCTTTTGTCGTGGAAGTGCTGGAGGTTATGACTATGTACTGTCCTTTGTTCCTGGAGTGATCTCTCAAAAATTTAGGGCAGCTGGTGAAAAGTTCTTGCAGCTGTACATAAATATGAGAACTCAGAGAATATCACTTCTCCTGAAGAAGAGGTTTGCCACACCCAATTGGGTTAAGCACAAGGAACCGAGAGAAGTTCATATGTGTGTTGATTTATTTCTACAAGAGCTAAAAATTACGGGTAATGAAGTGAAGCAGATTTTGCCTCAAGATTTGACGAAGCACCGAAGAGCTGATAGTAATGGGAGCTCTGCTTCATCAAGAAGCAACTCTTTCCGGGAGGAGAAGGAGAAGTTGAGTCGCTCTAATATTCAGAAGGGAAGGAGCCAACAGCTTTTGGAAACACACCTAGCCAAGCTGTTTAAGCAAAAGGTTGAAATTTTCACAAAAGTAGAATATACACAGGAATCAGTGGTTATGACCATTGTTAAATTGTGCCTTAAAAGTTTACAAGAATATGCTAGGCTCCAGACTTTTAACCGGAGTGGATTTCAGCAAATTCAATTGGATATTCAGTTCTTGAGGACTCCATTGAAAGAAATAGTTGAAGATGAGGCTGCAATGGATTTCTTGCTTGATGAGGTGATCGTTGCCGCTGTAGAGCGATGCCTTGATCCAATTCCTTTGGAGCTCCCCATATTGGATAGACTTATACAGGCAAAACTGGCACAACATAAGGAATTCGATTTAATATCTCCATAG 2718 0.4169 MRALLLAHAMTTPLFHRKILCNFYLFCLLRHPLSLDTPSAIVRVECASWVAVLHVSNFSGVQGVREPQWTLAALRMTDGVAPQLDQRHKATAGEYAVGLVLEHTLDANYARNSYSDEDDNVSFVLPVLISKIEGVSLSHSDSTNKVQKEDMDIDDTLLDEKARRTRDLLASFYSPIPSASSNNPFSKHISPDDINSSSFQPDQYMKIMARKSNLEGLLQKHVEMVAEIKNLDTDLQMLVYENYNKFICATDTIKRMKSNILGMEENMEQLLEKIMSVQSRSDSVNTSLCENREHIEKMHRTCNLLRKVQFIYDLPDRLGKCIKSEAYADAVRFYIGSMPIFKAYGDSSFQDCKRASEEAIAIIVKNLQGKVFSDSESMQVRAEAAVLLKQLNFPVDYLKTKLLEKLELSLTDVQIIPEVMKNEYPSVHEAAINEFVEALRAFRVIFPDSEKQLVKLAQDLLTKLGSLPYNAKYFVIIEAYVMTRICSEDLLGVLRVIWNDVLRLVEVLEDISLSNNSLEATKNAVKLYIRSAFFHLMQDISDHLLKVLKRGGAEEYSLEVALDASIKAVYDGGRNVLLDIHKILDDNLEIVDKLRELIIDWVQQGYQNFFRELEVQFLSFLGRNNSSATQSHGLEGAQGDKAFPRLALDLAASFCRGSAGGYDYVLSFVPGVISQKFRAAGEKFLQLYINMRTQRISLLLKKRFATPNWVKHKEPREVHMCVDLFLQELKITGNEVKQILPQDLTKHRRADSNGSSASSRSNSFREEKEKLSRSNIQKGRSQQLLETHLAKLFKQKVEIFTKVEYTQESVVMTIVKLCLKSLQEYARLQTFNRSGFQQIQLDIQFLRTPLKEIVEDEAAMDFLLDEVIVAAVERCLDPIPLELPILDRLIQAKLAQHKEFDLISP 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02060 905 PANTHER UNCHARACTERIZED 159 899 IPR014812 -
Vimu6g02060 905 MobiDBLite consensus disorder prediction 743 778 - -
Vimu6g02060 905 Pfam Vps51/Vps67 194 279 - -
Vimu6g02060 905 Coils Coil 253 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02060 Vimu-Chr6 18405939 18419825 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02060 K20296 - gmx:100818891 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02060 6 18405939 18419825 Vimu6g02060 6 18405939 18419825 ECH
Vimu6g02060 6 18405939 18419825 Vimu3g01846 3 33233812 33244052 PCT