Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01846 ATGAGTAGTCAGCCCAGGTCAACTAGACATGGGCCAAGGAGCCATGTAGGCCCGTTTTCCACTCACCTGGAACATGGTCATTCGCTTTCAACTTTCAACAAAGATCAAACTGGTTTCACTACATTTCACAGATCGGAGAGAGAACGGAGTTGGTTCAACCGACACAACAGAGGAAAGGAGAAGAGAAAGAAGAAAATGGGGACTGATGAAGTACCAATGGACGACAAGGCGAAGAGGATGAGAGATCTGCTATCGAGTTTCTACTCACCAGACCCTTCCAACTCCAACACCTCCTCCAACAACGCTTCCCTTGACGATATCAATTCCACCTCCTTCGATCCCGATCAGTACATGAACATCCTGGCGTACAAGTCCAATTTGGAAGGGCTGCTTCAACGTCACGTTGAAATGGCTGCTGAAATAAAGAATCTCGACACCGACTTGCAAATGCTGGTCTACGAGAATTACAACAAAATGAAGAGTAACATTTCAGGGATGGAGGCGAACATGGAACAGCTTCTTGAGAAGATCATGTCTGTGCAGTCAAGAAGTGACAATGTCAACACTTCTCTATTTGACAAAAGGGAGCATATCGAGAAGGTGCATCGGACTTGTAATCTTCTTCGTAAAGTTCAGTTCATATATGATCTACCCGATAGACTAGGTAAGTGCATCAAGTCAGAGGCTTACGCAGATGCCGTCAGGTTCTATACTGGAGCAATGCCAATTTTTAAGGCATATGGAGATTCATCATTCCGGGATTGTAAGCAAGCTTCTGAAGAAGCAATGGCTATCATAGTAAAAAACTTACAGGGGAAGCTATTTTCAGATTCTGAATCAATACAAGTGAGAGCTGATGCAGCAGTGCTTCTTAAGCAGTTGGATTTTCCGGTGGATAATTTAAAGACGAAGTTATTTGAAAAGTTACAACAATCTATTACAGACATTCGACTTAACCCTATAGAAAGAAACAATGCATCCAGGGACTATTCTGCTCACGAGGCAGCTGTTCATGAATTTGTGGAGGCAGTTCGTGCATTTAGAGTTATATTTCCTGATTCTGATGGACAATTGGTTAAACTTGCTGAAGACTCAGTCACCAAGAACTTTGTAATTGCTGAGGAATATGTAAAGACACGGATTTGCCCAGATGATCTACTTGGTGTTCTTCGAGTTATCTGGAATGATGTGCTCCTAATAGATGAAGTCTTGCAGGAAGCAGCTCTCTCAAACCATTCTCTTGAGGCTGCAAAGGCTGTCCTCATGTCATTTGTTAGAAGTGCATTTTCTCATCTTCTGCAAGACATCTCAGGCTCCCTCTTACAAATCCTGAAAAAGGATGGTGCAGAACAGTGCTCTCTTGATGTTGTTCTTGATGCAAGTACAAAATCAGTTCTCCAAGGAAGCTTGAATGTCTTGTTGGATTTCCGCAAAATTTTAGATGAAAAGTCTGGGATCGTAGTTAGATTAAGAGAGTTAATTATTGATTGGGTTCAAGAAGGACTTCAGGACTTTTTCACGAAACTGGAGGATCAGTTCCTTCTATTATCAGGTAGAAGTAACTCATCTATTCAAGCACACGGTTTGGCAGAGGGTGCTCAAGGGGATAAAGCTTTTGCTGGCCTTGTCCTTGTGCTGGCCCAGTTGTCTGCTTTCATTGAACAAACTGTCATCCCAAAAGTCACCGAGGCAAGGGAAATAGCTTCTTCCTTTTCTGGGGGTAGCATTAGAGGTCATGAATCTGGACCTGCCTTTGTTCCTGGAGAAATATGTCGAAAATTTCGGTCAGCTGGTGAAAAGTTCCTGCACTTGTACGTAAATATGAGAACTCAGAGGGTATCATTTCTCCTGAAGAAGAGGTTTACCACCCCTAATTGGGTTAAGCATAAAGAGCCAAGAGAAGTTCATATGTTTGTTGATCTGTTTCTTCAAGAGCTTGAAGGTATAGTTAAGGAAGTGAAGCAGATATTGCCACAAGGTAAACGTAAGCACCGCAGGACTGATAGTAATGGAAGTAGTGCTTCCTCAAGGAGCAACCCATTACGGGAAGAGAAACTGGGTAGGTCAAACACTCAAAGGGCAAGGAGCCAGCTTTTGGAAACGCATCTGGCAAAGTTGTTTAAGCAGAAAGTTGAAATTTTTAACAAAGTAGAATATACACAGGAGTCTGTTGTTACAACTTTAGTTAAATTGTGTCTTAAAAGTTTACAAGAATTTGCCCGACTCCAGACTTTTAACCGAAGTGGATTCCAGCAAATTCAAGTAGACATCCAATTCCTAAGGATCCCTTTAAGGGATATAGTTGAAGATGAAGCGGCAATCGACTTCTTGCTTGATGAGGTGATTGTTGCCACCGCAGAACGATGTCTAGATCCGGTTCCATTGGAGCCTCCCATATTGGACAAACTTATACGAGCAAAGTTGGGTAAAACCGAGCAGCAAAATACAACTTCTTCATAA 2460 0.4236 MSSQPRSTRHGPRSHVGPFSTHLEHGHSLSTFNKDQTGFTTFHRSERERSWFNRHNRGKEKRKKKMGTDEVPMDDKAKRMRDLLSSFYSPDPSNSNTSSNNASLDDINSTSFDPDQYMNILAYKSNLEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKMKSNISGMEANMEQLLEKIMSVQSRSDNVNTSLFDKREHIEKVHRTCNLLRKVQFIYDLPDRLGKCIKSEAYADAVRFYTGAMPIFKAYGDSSFRDCKQASEEAMAIIVKNLQGKLFSDSESIQVRADAAVLLKQLDFPVDNLKTKLFEKLQQSITDIRLNPIERNNASRDYSAHEAAVHEFVEAVRAFRVIFPDSDGQLVKLAEDSVTKNFVIAEEYVKTRICPDDLLGVLRVIWNDVLLIDEVLQEAALSNHSLEAAKAVLMSFVRSAFSHLLQDISGSLLQILKKDGAEQCSLDVVLDASTKSVLQGSLNVLLDFRKILDEKSGIVVRLRELIIDWVQEGLQDFFTKLEDQFLLLSGRSNSSIQAHGLAEGAQGDKAFAGLVLVLAQLSAFIEQTVIPKVTEAREIASSFSGGSIRGHESGPAFVPGEICRKFRSAGEKFLHLYVNMRTQRVSFLLKKRFTTPNWVKHKEPREVHMFVDLFLQELEGIVKEVKQILPQGKRKHRRTDSNGSSASSRSNPLREEKLGRSNTQRARSQLLETHLAKLFKQKVEIFNKVEYTQESVVTTLVKLCLKSLQEFARLQTFNRSGFQQIQVDIQFLRIPLRDIVEDEAAIDFLLDEVIVATAERCLDPVPLEPPILDKLIRAKLGKTEQQNTTSS 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01846 819 Pfam Vps51/Vps67 107 187 - -
Vimu3g01846 819 MobiDBLite consensus disorder prediction 87 107 - -
Vimu3g01846 819 MobiDBLite consensus disorder prediction 63 82 - -
Vimu3g01846 819 Coils Coil 156 183 - -
Vimu3g01846 819 PANTHER UNCHARACTERIZED 71 815 IPR014812 -
Vimu3g01846 819 MobiDBLite consensus disorder prediction 1 107 - -
Vimu3g01846 819 MobiDBLite consensus disorder prediction 40 55 - -
Vimu3g01846 819 MobiDBLite consensus disorder prediction 24 39 - -
Vimu3g01846 819 MobiDBLite consensus disorder prediction 657 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01846 Vimu-Chr3 33233812 33244052 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01846 K20296 - gmx:100818891 1265.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01846 3 33233812 33244052 Vimu3g01846 3 33233812 33244052 ECH
Vimu6g02060 6 18405939 18419825 Vimu3g01846 3 33233812 33244052 PCT