Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01993 ATGCGAATTGCTGCTGTTGTTAATGGTTTTAATAAAATTGATGAAATGGGAAAGTTTCTCGCATTCTCACTGCACGTGGAAGTGCTTCTGGTACTTGCATTGCTCAGTTGTAGCCCGGGAATAGTATGGAGCAACACACTTTGCCAACAGACAAACGACGAAGTTCGACCTCACAGCGTCAGCATCACCGAATTTGGTGCAGTTGGTGATGGAGTCACTCTCAACACAAAAGCATTTCAAAATGCCATCTTCTACCTGAATTCCTTTGCTGACAAAGGTGGAGCCAAGCTTTTTGTCCCAGCTGGTCGATGGTTAACCGGTAGTTTTGATCTCATCAGTCATCTGACTTTGTGGTTGGACAAGGATGCAGTAATTCTCGGATCAACGAACCCTGAAGATTGGCCAGTTGTTGATCCTCTGCCGTCGTATGGAAGAGGAAGAGAGTTGCCAGGTAGAAGGCATAAAAGCCTCGTTTATGGGCGCAATTTGACTGATGTGATCATAACAGGTAATAATGGGACTATCGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAGGAACAAAACTCTGGATTATACACGTCCCCATTTGATAGAATTGATAAACTCAACAGGGTCCATCCTGTGTATTGCAGGTTTGTCCTCCACTGAAGGATTGACTTTGTATCTTATTCCTCGGGCAGATTTGAGACTGTTTTTCTGGATGAACAGCCATGTTACAGTTCAAAAAGTGGCGATCTTTGCTCCTCTTGATTCTCCAAATACCGATGGGATTGATCCGGATTCTTCTGACAACGTTTGCATTGAGGACTGTTACATAAGCACTGGTGATGATCTGATTGCAATCAAGAGCGGGTGGGATGAGTATGGCATTGCATACAGTCGCCCGTGCACAAACATTGTCATCCACAGGCTTGTTGGTAAAACTGAAACGAGTGCAGGGATTGCAATAGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGTACAAGATGTTCAATTCTACGATTCAAATACTGCAATCAGAATAAAGACTTCTCCTGGAAGGGGTGGTTATGTCAGAAACATCTATGTCTCAAATGTGACCTTGACTAATGTAGATATTGCTATTAGGTTCACTGGTTTATTTGGGGAACATCCAGATGATGCCTATGATCCAAATGCTCTGCCTGTAATAGAAAAGATTACAATCAAGGATGTGGTGGGGGAGAATATCAAAACTGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTCAACGTTTGCCTATCAAACATTGTCCTTAATGTGAGCTCAAACTATCCATGGAACTGCTCCTATGTTAAAGGATATTCCGACTTGGTTATGCCAGAAGCTTGTGAGCCTCTCAAAGAAAGGATTTTTCCTGAGCATTGTTCAGATTGTTACTATATGTCAAATCAAATTCAGAGTTCGAAAAGCCAAAATAGAGGTGCTTGGTTTATGTCTTGGTAA 1482 0.4244 MRIAAVVNGFNKIDEMGKFLAFSLHVEVLLVLALLSCSPGIVWSNTLCQQTNDEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGRRHKSLVYGRNLTDVIITGNNGTIDGQGSIWWSMFRNKTLDYTRPHLIELINSTGSILCIAGLSSTEGLTLYLIPRADLRLFFWMNSHVTVQKVAIFAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYSRPCTNIVIHRLVGKTETSAGIAIGSEMSGGVSEVHVQDVQFYDSNTAIRIKTSPGRGGYVRNIYVSNVTLTNVDIAIRFTGLFGEHPDDAYDPNALPVIEKITIKDVVGENIKTAGLIEGIEGDNFVNVCLSNIVLNVSSNYPWNCSYVKGYSDLVMPEACEPLKERIFPEHCSDCYYMSNQIQSSKSQNRGAWFMSW 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01993 493 Pfam Pectate lyase superfamily protein 60 106 IPR024535 -
Vimu6g01993 493 Pfam Glycosyl hydrolases family 28 156 445 IPR000743 GO:0004650|GO:0005975
Vimu6g01993 493 SUPERFAMILY Pectin lyase-like 52 459 IPR011050 -
Vimu6g01993 493 PANTHER PECTIN LYASE-RELATED 36 479 - -
Vimu6g01993 493 SMART pbh1 326 347 IPR006626 -
Vimu6g01993 493 SMART pbh1 264 296 IPR006626 -
Vimu6g01993 493 SMART pbh1 355 376 IPR006626 -
Vimu6g01993 493 SMART pbh1 298 320 IPR006626 -
Vimu6g01993 493 SMART pbh1 237 263 IPR006626 -
Vimu6g01993 493 Gene3D - 43 447 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01993 Vimu-Chr6 17887324 17889685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01993 24 493 Glycoside Hydrolase AT3G62110 63.257 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01993 - - gmx:100782602 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01993 6 17887324 17889685 Vimu3g01924 3 34220495 34223038 PCT